Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Olfr129-201ENSMUST00000122318 993 ntBASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Gm27742-201ENSMUST00000184667 60 ntBASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 AC154471.1-201ENSMUST00000224418 436 ntBASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC15.08■□□□□ 0.01
Lima1Q9ERG0 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Lima1Q9ERG0 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Lima1Q9ERG0 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Lima1Q9ERG0 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Lima1Q9ERG0 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Lima1Q9ERG0 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Lima1Q9ERG0 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Lima1Q9ERG0 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Gm13312-201ENSMUST00000119631 718 ntBASIC15.08■□□□□ 0
Lima1Q9ERG0 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Lima1Q9ERG0 Mir6404-201ENSMUST00000183699 94 ntBASIC15.08■□□□□ 0
Lima1Q9ERG0 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC15.08■□□□□ 0
Lima1Q9ERG0 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC15.08■□□□□ 0
Lima1Q9ERG0 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC15.08■□□□□ 0
Lima1Q9ERG0 Gm37297-201ENSMUST00000192974 2384 ntBASIC15.08■□□□□ 0
Lima1Q9ERG0 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Lima1Q9ERG0 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC15.08■□□□□ 0
Lima1Q9ERG0 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC15.08■□□□□ 0
Lima1Q9ERG0 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Lima1Q9ERG0 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC15.08■□□□□ 0
Lima1Q9ERG0 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Lima1Q9ERG0 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Lima1Q9ERG0 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC15.07■□□□□ 0
Lima1Q9ERG0 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC15.07■□□□□ 0
Lima1Q9ERG0 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC15.07■□□□□ 0
Lima1Q9ERG0 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Lima1Q9ERG0 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
Lima1Q9ERG0 Gm38058-201ENSMUST00000194323 4368 ntBASIC15.07■□□□□ 0
Lima1Q9ERG0 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Lima1Q9ERG0 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Lima1Q9ERG0 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Lima1Q9ERG0 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Lima1Q9ERG0 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Lima1Q9ERG0 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC15.07■□□□□ 0
Lima1Q9ERG0 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC15.07■□□□□ 0
Lima1Q9ERG0 Gm27704-201ENSMUST00000185094 107 ntBASIC15.07■□□□□ 0
Lima1Q9ERG0 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Lima1Q9ERG0 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
Lima1Q9ERG0 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC15.07■□□□□ 0
Lima1Q9ERG0 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC15.07■□□□□ 0
Lima1Q9ERG0 Gm7367-201ENSMUST00000057611 492 ntBASIC15.07■□□□□ 0
Lima1Q9ERG0 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC15.07■□□□□ 0
Lima1Q9ERG0 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Lima1Q9ERG0 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC15.07■□□□□ 0
Lima1Q9ERG0 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Lima1Q9ERG0 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Lima1Q9ERG0 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC15.07■□□□□ 0
Lima1Q9ERG0 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Lima1Q9ERG0 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC15.07■□□□□ 0
Lima1Q9ERG0 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Lima1Q9ERG0 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
Lima1Q9ERG0 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Lima1Q9ERG0 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Lima1Q9ERG0 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Lima1Q9ERG0 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Lima1Q9ERG0 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Lima1Q9ERG0 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Lima1Q9ERG0 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Lima1Q9ERG0 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Lima1Q9ERG0 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
Lima1Q9ERG0 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Lima1Q9ERG0 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Lima1Q9ERG0 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC15.06■□□□□ 0
Lima1Q9ERG0 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
Lima1Q9ERG0 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC15.06■□□□□ 0
Lima1Q9ERG0 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC15.06■□□□□ 0
Lima1Q9ERG0 Gm7977-201ENSMUST00000193787 748 ntBASIC15.06■□□□□ 0
Lima1Q9ERG0 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Lima1Q9ERG0 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms