Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 AKR1C7P-201ENST00000305623 895 ntBASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 MIR1233-2-201ENST00000408138 82 ntBASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 MIR1233-1-201ENST00000408722 82 ntBASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 AC092865.5-201ENST00000545435 363 ntBASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 AC009154.2-201ENST00000621177 724 ntBASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDDC3Q8N4P3 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 AC096582.2-201ENST00000510860 516 ntBASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 KRT18P58-201ENST00000527480 1120 ntBASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 BNIP3P18-201ENST00000593976 575 ntBASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
HDDC3Q8N4P3 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 AL591684.3-201ENST00000605187 298 ntBASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDDC3Q8N4P3 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 MTCL1P1-201ENST00000446207 792 ntBASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 FAM197Y8-203ENST00000450145 560 ntBASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms