Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Sdc1P18828 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC12.55□□□□□ -0.4
Sdc1P18828 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC12.55□□□□□ -0.4
Sdc1P18828 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Sdc1P18828 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
Sdc1P18828 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Sdc1P18828 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
Sdc1P18828 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Sdc1P18828 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Sdc1P18828 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Gm43859-201ENSMUST00000200075 1412 ntBASIC12.54□□□□□ -0.4
Sdc1P18828 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Sdc1P18828 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Sdc1P18828 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC12.54□□□□□ -0.4
Sdc1P18828 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC12.54□□□□□ -0.4
Sdc1P18828 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Gm19863-201ENSMUST00000192480 2218 ntBASIC12.54□□□□□ -0.4
Sdc1P18828 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sdc1P18828 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Sdc1P18828 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC12.53□□□□□ -0.4
Sdc1P18828 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Sdc1P18828 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Sdc1P18828 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Gm6257-201ENSMUST00000163864 910 ntBASIC12.53□□□□□ -0.4
Sdc1P18828 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Sdc1P18828 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Sdc1P18828 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Sdc1P18828 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC12.53□□□□□ -0.4
Sdc1P18828 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Sdc1P18828 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC12.53□□□□□ -0.4
Sdc1P18828 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sdc1P18828 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Sdc1P18828 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms