Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.513e-6■□□□□ 8
SUB1P53999 ISYNA1-211ENST00000582811 2039 ntTSL 217.37■□□□□ 0.373e-6■□□□□ 8
SUB1P53999 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.173e-6■□□□□ 8
SUB1P53999 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC15.07■□□□□ 03e-6■□□□□ 8
SUB1P53999 SLC6A6-203ENST00000610642 1983 ntTSL 214.98□□□□□ -0.013e-6■□□□□ 8
SUB1P53999 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC14.93□□□□□ -0.023e-6■□□□□ 8
SUB1P53999 NOSIP-216ENST00000601340 2197 ntTSL 214.46□□□□□ -0.13e-6■□□□□ 8
SUB1P53999 ISYNA1-210ENST00000582770 1654 ntTSL 214.03□□□□□ -0.163e-6■□□□□ 8
SUB1P53999 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC13.89□□□□□ -0.193e-6■□□□□ 8
SUB1P53999 SLC6A6-209ENST00000622176 1116 ntTSL 1 (best)13.52□□□□□ -0.253e-6■□□□□ 8
SUB1P53999 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC13.31□□□□□ -0.283e-6■□□□□ 8
SUB1P53999 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC13.22□□□□□ -0.291e-16■□□□□ 8
SUB1P53999 SLC6A6-206ENST00000615188 689 ntTSL 312.66□□□□□ -0.383e-6■□□□□ 8
SUB1P53999 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.393e-6■□□□□ 8
SUB1P53999 ISYNA1-209ENST00000582287 696 ntTSL 1 (best)12.62□□□□□ -0.393e-6■□□□□ 8
SUB1P53999 IRAK1-211ENST00000463031 357 ntTSL 312.29□□□□□ -0.443e-6■□□□□ 8
SUB1P53999 NOSIP-212ENST00000599537 833 ntTSL 511.83□□□□□ -0.523e-6■□□□□ 8
SUB1P53999 EDC4-214ENST00000577105 580 ntTSL 311.76□□□□□ -0.533e-6■□□□□ 8
SUB1P53999 NOSIP-209ENST00000598820 2615 ntTSL 211.71□□□□□ -0.533e-6■□□□□ 8
SUB1P53999 NOSIP-213ENST00000600019 1167 ntTSL 511.59□□□□□ -0.553e-6■□□□□ 8
SUB1P53999 SLC6A6-210ENST00000622186 6528 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.583e-6■□□□□ 8
SUB1P53999 SLC6A6-204ENST00000613060 6526 ntTSL 1 (best) BASIC11.22□□□□□ -0.613e-6■□□□□ 8
SUB1P53999 SLC6A6-202ENST00000452775 458 ntTSL 411.13□□□□□ -0.633e-6■□□□□ 8
SUB1P53999 ISYNA1-203ENST00000577820 1466 ntTSL 511.05□□□□□ -0.643e-6■□□□□ 8
SUB1P53999 ISYNA1-214ENST00000583816 860 ntTSL 311.01□□□□□ -0.653e-6■□□□□ 8
SUB1P53999 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC10.71□□□□□ -0.693e-6■□□□□ 8
SUB1P53999 SLC6A6-207ENST00000618278 6401 ntTSL 510.38□□□□□ -0.753e-6■□□□□ 8
SUB1P53999 NOSIP-206ENST00000598296 529 ntTSL 310.31□□□□□ -0.763e-6■□□□□ 8
SUB1P53999 NOSIP-204ENST00000596358 1005 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.83e-6■□□□□ 8
SUB1P53999 EDC4-207ENST00000573992 3934 ntTSL 1 (best)9.64□□□□□ -0.873e-6■□□□□ 8
SUB1P53999 ISYNA1-212ENST00000583309 371 ntTSL 29.55□□□□□ -0.883e-6■□□□□ 8
SUB1P53999 NOSIP-203ENST00000594932 602 ntTSL 59□□□□□ -0.973e-6■□□□□ 8
SUB1P53999 NOSIP-202ENST00000593345 933 ntTSL 38.66□□□□□ -1.023e-6■□□□□ 8
SUB1P53999 ESYT1-204ENST00000548142 563 ntTSL 38.48□□□□□ -1.053e-6■□□□□ 8
SUB1P53999 H2AFZ-205ENST00000527366 435 ntTSL 38.44□□□□□ -1.063e-6■□□□□ 8
SUB1P53999 ESYT1-207ENST00000550878 646 ntTSL 58.42□□□□□ -1.063e-6■□□□□ 8
SUB1P53999 AC040162.3-201ENST00000572067 3907 ntBASIC8.35□□□□□ -1.073e-6■□□□□ 8
SUB1P53999 RFK-205ENST00000483155 962 ntTSL 28.07□□□□□ -1.123e-6■□□□□ 8
SUB1P53999 ISYNA1-207ENST00000581672 793 ntTSL 27.87□□□□□ -1.153e-6■□□□□ 8
SUB1P53999 MARS-228ENST00000552371 699 ntTSL 37.69□□□□□ -1.183e-6■□□□□ 8
SUB1P53999 RFK-206ENST00000490113 2386 ntTSL 27.53□□□□□ -1.23e-6■□□□□ 8
SUB1P53999 NOSIP-207ENST00000598544 429 ntTSL 37.43□□□□□ -1.223e-6■□□□□ 8
SUB1P53999 HSPA8-208ENST00000526686 740 ntTSL 1 (best)2.76□□□□□ -1.973e-6■□□□□ 8
SUB1P53999 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC1.91□□□□□ -2.13e-6■□□□□ 8
Retrieved 44 of 11,644 protein–RNA pairs in 298 ms