Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Sdc1P18828 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC12.58□□□□□ -0.4
Sdc1P18828 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
Sdc1P18828 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC12.58□□□□□ -0.4
Sdc1P18828 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC12.58□□□□□ -0.4
Sdc1P18828 Gm7791-201ENSMUST00000219066 539 ntBASIC12.58□□□□□ -0.4
Sdc1P18828 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Sdc1P18828 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
Sdc1P18828 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
Sdc1P18828 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Sdc1P18828 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
Sdc1P18828 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Sdc1P18828 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Sdc1P18828 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Sdc1P18828 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Sdc1P18828 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC12.57□□□□□ -0.4
Sdc1P18828 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC12.57□□□□□ -0.4
Sdc1P18828 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Sdc1P18828 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Gm7669-201ENSMUST00000210184 1603 ntBASIC12.57□□□□□ -0.4
Sdc1P18828 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC12.57□□□□□ -0.4
Sdc1P18828 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
Sdc1P18828 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC12.57□□□□□ -0.4
Sdc1P18828 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sdc1P18828 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Sdc1P18828 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Sdc1P18828 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC12.56□□□□□ -0.4
Sdc1P18828 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC12.56□□□□□ -0.4
Sdc1P18828 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Gm23547-201ENSMUST00000158210 271 ntBASIC12.56□□□□□ -0.4
Sdc1P18828 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Gm38318-201ENSMUST00000195769 1706 ntBASIC12.56□□□□□ -0.4
Sdc1P18828 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Sdc1P18828 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Sdc1P18828 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Sdc1P18828 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sdc1P18828 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms