Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Cdx1P18111 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Cdx1P18111 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Cdx1P18111 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Cdx1P18111 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Cdx1P18111 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Cdx1P18111 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Cdx1P18111 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Cdx1P18111 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Cdx1P18111 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Cdx1P18111 Gm38391-201ENSMUST00000191720 4069 ntBASIC12.38□□□□□ -0.43
Cdx1P18111 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Cdx1P18111 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Cdx1P18111 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Cdx1P18111 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Cdx1P18111 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC12.37□□□□□ -0.43
Cdx1P18111 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC12.37□□□□□ -0.43
Cdx1P18111 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC12.37□□□□□ -0.43
Cdx1P18111 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Cdx1P18111 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Cdx1P18111 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC12.37□□□□□ -0.43
Cdx1P18111 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC12.37□□□□□ -0.43
Cdx1P18111 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Gm5357-201ENSMUST00000212720 1924 ntBASIC12.37□□□□□ -0.43
Cdx1P18111 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Cdx1P18111 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Cdx1P18111 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Cdx1P18111 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Cdx1P18111 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC12.36□□□□□ -0.43
Cdx1P18111 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC12.36□□□□□ -0.43
Cdx1P18111 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC12.36□□□□□ -0.43
Cdx1P18111 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Gm37297-201ENSMUST00000192974 2384 ntBASIC12.36□□□□□ -0.43
Cdx1P18111 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
Cdx1P18111 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Cdx1P18111 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC12.35□□□□□ -0.43
Cdx1P18111 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 AC164107.1-201ENSMUST00000227730 2161 ntBASIC12.35□□□□□ -0.43
Cdx1P18111 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC12.35□□□□□ -0.43
Cdx1P18111 Gm14464-201ENSMUST00000119658 1254 ntBASIC12.35□□□□□ -0.43
Cdx1P18111 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Cdx1P18111 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms