Protein–RNA interactions for Protein: P09631

Hoxa9, Homeobox protein Hox-A9, mousemouse

Predictions only

Length 271 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa9P09631 Gm13616-201ENSMUST00000120600 222 ntBASIC15.34■□□□□ 0.05
Hoxa9P09631 Gm11745-201ENSMUST00000121669 448 ntBASIC15.34■□□□□ 0.05
Hoxa9P09631 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Hoxa9P09631 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Hoxa9P09631 Gm44335-201ENSMUST00000196879 141 ntBASIC15.34■□□□□ 0.05
Hoxa9P09631 Gm44297-201ENSMUST00000198304 141 ntBASIC15.34■□□□□ 0.05
Hoxa9P09631 Gm44346-201ENSMUST00000198851 141 ntBASIC15.34■□□□□ 0.05
Hoxa9P09631 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC15.34■□□□□ 0.05
Hoxa9P09631 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
Hoxa9P09631 Gpr146-202ENSMUST00000053120 1040 ntBASIC15.34■□□□□ 0.05
Hoxa9P09631 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Hoxa9P09631 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Hoxa9P09631 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Hoxa9P09631 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC15.34■□□□□ 0.05
Hoxa9P09631 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Hoxa9P09631 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Hoxa9P09631 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Hoxa9P09631 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Hoxa9P09631 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Hoxa9P09631 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Hoxa9P09631 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Hoxa9P09631 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Hoxa9P09631 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Hoxa9P09631 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Hoxa9P09631 Gm7669-201ENSMUST00000210184 1603 ntBASIC15.33■□□□□ 0.04
Hoxa9P09631 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Hoxa9P09631 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Hoxa9P09631 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Hoxa9P09631 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC15.33■□□□□ 0.04
Hoxa9P09631 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Hoxa9P09631 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC15.33■□□□□ 0.04
Hoxa9P09631 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Hoxa9P09631 Rpph1-201ENSMUST00000175096 319 ntBASIC15.33■□□□□ 0.04
Hoxa9P09631 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Hoxa9P09631 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC15.33■□□□□ 0.04
Hoxa9P09631 Mir6990-201ENSMUST00000183724 91 ntBASIC15.33■□□□□ 0.04
Hoxa9P09631 AC160980.1-201ENSMUST00000224136 970 ntBASIC15.33■□□□□ 0.04
Hoxa9P09631 AC158982.1-201ENSMUST00000228377 901 ntBASIC15.33■□□□□ 0.04
Hoxa9P09631 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC15.33■□□□□ 0.04
Hoxa9P09631 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Hoxa9P09631 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Hoxa9P09631 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Hoxa9P09631 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Hoxa9P09631 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Hoxa9P09631 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Hoxa9P09631 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Hoxa9P09631 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Hoxa9P09631 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Gm38327-201ENSMUST00000195852 1755 ntBASIC15.32■□□□□ 0.04
Hoxa9P09631 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
Hoxa9P09631 AC163637.1-201ENSMUST00000215491 1894 ntBASIC15.32■□□□□ 0.04
Hoxa9P09631 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC15.32■□□□□ 0.04
Hoxa9P09631 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Hoxa9P09631 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Hoxa9P09631 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Hoxa9P09631 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC15.32■□□□□ 0.04
Hoxa9P09631 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Hoxa9P09631 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Hoxa9P09631 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
Hoxa9P09631 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Hoxa9P09631 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Hoxa9P09631 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hoxa9P09631 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hoxa9P09631 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hoxa9P09631 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hoxa9P09631 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hoxa9P09631 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hoxa9P09631 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hoxa9P09631 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Hoxa9P09631 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC15.31■□□□□ 0.04
Hoxa9P09631 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC15.31■□□□□ 0.04
Hoxa9P09631 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Hoxa9P09631 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hoxa9P09631 Gm14057-201ENSMUST00000120631 482 ntBASIC15.31■□□□□ 0.04
Hoxa9P09631 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Hoxa9P09631 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC15.31■□□□□ 0.04
Hoxa9P09631 Gm18889-201ENSMUST00000174284 929 ntBASIC15.31■□□□□ 0.04
Hoxa9P09631 Gm20553-201ENSMUST00000204205 844 ntBASIC15.31■□□□□ 0.04
Hoxa9P09631 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC15.31■□□□□ 0.04
Hoxa9P09631 AC139382.1-201ENSMUST00000221402 498 ntBASIC15.31■□□□□ 0.04
Hoxa9P09631 AC140397.2-201ENSMUST00000224213 834 ntBASIC15.31■□□□□ 0.04
Hoxa9P09631 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms