Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim39Q9ESN2 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC14.36□□□□□ -0.11
Trim39Q9ESN2 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim39Q9ESN2 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim39Q9ESN2 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim39Q9ESN2 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 AC174678.1-201ENSMUST00000228007 2749 ntBASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim39Q9ESN2 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Gm45760-201ENSMUST00000212190 1782 ntBASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim39Q9ESN2 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim39Q9ESN2 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim39Q9ESN2 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim39Q9ESN2 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim39Q9ESN2 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim39Q9ESN2 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Trim39Q9ESN2 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Gm13312-201ENSMUST00000119631 718 ntBASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 AC153794.1-201ENSMUST00000169148 126 ntBASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Otx2os1-206ENSMUST00000228153 787 ntBASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trim39Q9ESN2 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms