Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm10290-201ENSMUST00000200451 999 ntBASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Gm43068-201ENSMUST00000201095 1273 ntBASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Gm6013-201ENSMUST00000212264 699 ntBASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Gm17383-201ENSMUST00000078739 1041 ntBASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Dctn4-202ENSMUST00000223590 1530 ntBASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Gm5187-201ENSMUST00000117317 991 ntBASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.63■□□□□ 0.89
Scn4aQ9ER60 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Gm7561-201ENSMUST00000211203 886 ntBASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Gm7993-201ENSMUST00000200970 1384 ntBASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Gm24196-201ENSMUST00000179161 110 ntBASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 AC155637.1-201ENSMUST00000218560 636 ntBASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn4aQ9ER60 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn4aQ9ER60 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn4aQ9ER60 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn4aQ9ER60 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn4aQ9ER60 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn4aQ9ER60 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC20.61■□□□□ 0.89
Scn4aQ9ER60 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn4aQ9ER60 Gm15782-201ENSMUST00000121073 445 ntBASIC20.61■□□□□ 0.89
Scn4aQ9ER60 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC20.61■□□□□ 0.89
Scn4aQ9ER60 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn4aQ9ER60 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Scn4aQ9ER60 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn4aQ9ER60 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn4aQ9ER60 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Gm3961-201ENSMUST00000204425 994 ntBASIC20.6■□□□□ 0.89
Scn4aQ9ER60 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Gm14452-201ENSMUST00000118680 1632 ntBASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Gm42442-201ENSMUST00000197951 1133 ntBASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Gm9176-201ENSMUST00000219955 1120 ntBASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Scn4aQ9ER60 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn4aQ9ER60 Zscan30-202ENSMUST00000224144 1458 ntBASIC20.59■□□□□ 0.89
Scn4aQ9ER60 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn4aQ9ER60 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn4aQ9ER60 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn4aQ9ER60 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn4aQ9ER60 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC20.59■□□□□ 0.89
Scn4aQ9ER60 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Scn4aQ9ER60 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Scn4aQ9ER60 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC20.59■□□□□ 0.89
Scn4aQ9ER60 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC20.59■□□□□ 0.89
Scn4aQ9ER60 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC20.59■□□□□ 0.89
Scn4aQ9ER60 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn4aQ9ER60 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Scn4aQ9ER60 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms