Protein–RNA interactions for Protein: Q91Y16

Pcdha3, Protocadherin alpha 3, mousemouse

Predictions only

Length 942 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha3Q91Y16 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC16■□□□□ 0.15
Pcdha3Q91Y16 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Gm11764-201ENSMUST00000120221 623 ntBASIC16■□□□□ 0.15
Pcdha3Q91Y16 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC16■□□□□ 0.15
Pcdha3Q91Y16 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Gm13034-201ENSMUST00000121342 3177 ntBASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Pcdha3Q91Y16 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Gm12350-201ENSMUST00000121208 462 ntBASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Pcdha3Q91Y16 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Gm2308-201ENSMUST00000166539 1004 ntBASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 AC158538.2-201ENSMUST00000225455 906 ntBASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 AC159093.1-201ENSMUST00000227779 380 ntBASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Pcdha3Q91Y16 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms