Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp28Q5I043 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp28Q5I043 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp28Q5I043 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp28Q5I043 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC17.43■□□□□ 0.38
Usp28Q5I043 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC17.43■□□□□ 0.38
Usp28Q5I043 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp28Q5I043 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp28Q5I043 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Usp28Q5I043 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 Gm5837-201ENSMUST00000191844 1369 ntBASIC17.42■□□□□ 0.38
Usp28Q5I043 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 Gm8242-201ENSMUST00000193029 1420 ntBASIC17.42■□□□□ 0.38
Usp28Q5I043 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Usp28Q5I043 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC17.42■□□□□ 0.38
Usp28Q5I043 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC17.42■□□□□ 0.38
Usp28Q5I043 Gm8655-201ENSMUST00000221159 852 ntBASIC17.42■□□□□ 0.38
Usp28Q5I043 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Usp28Q5I043 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 Gm10676-201ENSMUST00000098778 3221 ntBASIC17.42■□□□□ 0.38
Usp28Q5I043 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC17.42■□□□□ 0.38
Usp28Q5I043 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp28Q5I043 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
Usp28Q5I043 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC17.41■□□□□ 0.38
Usp28Q5I043 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Usp28Q5I043 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC17.41■□□□□ 0.38
Usp28Q5I043 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Usp28Q5I043 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC17.41■□□□□ 0.38
Usp28Q5I043 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp28Q5I043 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Usp28Q5I043 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Usp28Q5I043 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
Usp28Q5I043 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
Usp28Q5I043 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 Gm15358-201ENSMUST00000119249 520 ntBASIC17.4■□□□□ 0.38
Usp28Q5I043 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 Gm8318-201ENSMUST00000182954 872 ntBASIC17.4■□□□□ 0.38
Usp28Q5I043 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Usp28Q5I043 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC17.4■□□□□ 0.38
Usp28Q5I043 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC17.4■□□□□ 0.38
Usp28Q5I043 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp28Q5I043 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Usp28Q5I043 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Usp28Q5I043 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Usp28Q5I043 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Usp28Q5I043 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp28Q5I043 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp28Q5I043 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp28Q5I043 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Usp28Q5I043 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp28Q5I043 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Usp28Q5I043 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Usp28Q5I043 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp28Q5I043 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC17.39■□□□□ 0.37
Usp28Q5I043 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Usp28Q5I043 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Usp28Q5I043 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp28Q5I043 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp28Q5I043 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms