Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Gm13616-201ENSMUST00000120600 222 ntBASIC13.24□□□□□ -0.29
Nkx3-1P97436 Gm14057-201ENSMUST00000120631 482 ntBASIC13.24□□□□□ -0.29
Nkx3-1P97436 Gm11745-201ENSMUST00000121669 448 ntBASIC13.24□□□□□ -0.29
Nkx3-1P97436 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC13.24□□□□□ -0.29
Nkx3-1P97436 Gm5312-201ENSMUST00000203728 547 ntBASIC13.24□□□□□ -0.29
Nkx3-1P97436 AC158982.1-201ENSMUST00000228377 901 ntBASIC13.24□□□□□ -0.29
Nkx3-1P97436 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
Nkx3-1P97436 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Nkx3-1P97436 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Gm12008-201ENSMUST00000117791 755 ntBASIC13.23□□□□□ -0.29
Nkx3-1P97436 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Nkx3-1P97436 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Nkx3-1P97436 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 CT010478.1-201ENSMUST00000220747 2787 ntBASIC13.22□□□□□ -0.29
Nkx3-1P97436 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Gm8318-201ENSMUST00000182954 872 ntBASIC13.22□□□□□ -0.29
Nkx3-1P97436 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Nkx3-1P97436 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Rprl2-201ENSMUST00000157150 290 ntBASIC13.21□□□□□ -0.29
Nkx3-1P97436 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Nkx3-1P97436 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms