Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col18a1P39061 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col18a1P39061 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Col18a1P39061 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
Col18a1P39061 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col18a1P39061 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col18a1P39061 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col18a1P39061 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col18a1P39061 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col18a1P39061 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col18a1P39061 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col18a1P39061 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col18a1P39061 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Col18a1P39061 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col18a1P39061 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col18a1P39061 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col18a1P39061 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC20.19■□□□□ 0.82
Col18a1P39061 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC20.19■□□□□ 0.82
Col18a1P39061 Gm8835-201ENSMUST00000173096 1169 ntBASIC20.19■□□□□ 0.82
Col18a1P39061 Gm28911-201ENSMUST00000188837 117 ntBASIC20.19■□□□□ 0.82
Col18a1P39061 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC20.19■□□□□ 0.82
Col18a1P39061 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
Col18a1P39061 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col18a1P39061 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col18a1P39061 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC20.19■□□□□ 0.82
Col18a1P39061 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col18a1P39061 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col18a1P39061 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Col18a1P39061 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
Col18a1P39061 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Col18a1P39061 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Col18a1P39061 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Col18a1P39061 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col18a1P39061 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Col18a1P39061 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Col18a1P39061 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col18a1P39061 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Col18a1P39061 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Col18a1P39061 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col18a1P39061 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Col18a1P39061 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Col18a1P39061 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC20.18■□□□□ 0.82
Col18a1P39061 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col18a1P39061 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col18a1P39061 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC20.18■□□□□ 0.82
Col18a1P39061 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Col18a1P39061 Gm5354-201ENSMUST00000182417 973 ntBASIC20.18■□□□□ 0.82
Col18a1P39061 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col18a1P39061 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col18a1P39061 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC20.17■□□□□ 0.82
Col18a1P39061 Gm15198-201ENSMUST00000117283 177 ntBASIC20.17■□□□□ 0.82
Col18a1P39061 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col18a1P39061 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col18a1P39061 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC20.17■□□□□ 0.82
Col18a1P39061 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC20.17■□□□□ 0.82
Col18a1P39061 Gm45098-201ENSMUST00000207179 657 ntBASIC20.17■□□□□ 0.82
Col18a1P39061 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
Col18a1P39061 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col18a1P39061 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC20.17■□□□□ 0.82
Col18a1P39061 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col18a1P39061 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col18a1P39061 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col18a1P39061 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Col18a1P39061 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col18a1P39061 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC20.17■□□□□ 0.82
Col18a1P39061 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col18a1P39061 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Col18a1P39061 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col18a1P39061 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col18a1P39061 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col18a1P39061 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col18a1P39061 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col18a1P39061 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col18a1P39061 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col18a1P39061 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col18a1P39061 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Col18a1P39061 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Col18a1P39061 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col18a1P39061 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.16■□□□□ 0.82
Col18a1P39061 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col18a1P39061 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC20.16■□□□□ 0.82
Col18a1P39061 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col18a1P39061 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Col18a1P39061 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
Col18a1P39061 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC20.16■□□□□ 0.82
Col18a1P39061 Gm17420-201ENSMUST00000164753 153 ntBASIC20.16■□□□□ 0.82
Col18a1P39061 Mir7654-201ENSMUST00000185082 70 ntBASIC20.16■□□□□ 0.82
Col18a1P39061 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Col18a1P39061 Gm10478-201ENSMUST00000084451 396 ntBASIC20.16■□□□□ 0.82
Col18a1P39061 Gm5912-201ENSMUST00000122282 1438 ntBASIC20.16■□□□□ 0.82
Col18a1P39061 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col18a1P39061 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col18a1P39061 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col18a1P39061 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col18a1P39061 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC20.15■□□□□ 0.82
Col18a1P39061 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col18a1P39061 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col18a1P39061 Gm27892-201ENSMUST00000185017 106 ntBASIC20.15■□□□□ 0.82
Col18a1P39061 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col18a1P39061 Gm42693-201ENSMUST00000196779 631 ntBASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms