Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Cln3Q61124 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Cln3Q61124 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Cln3Q61124 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC16.84■□□□□ 0.29
Cln3Q61124 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Cln3Q61124 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Cln3Q61124 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Cln3Q61124 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cln3Q61124 Gm15693-201ENSMUST00000120470 637 ntBASIC16.83■□□□□ 0.28
Cln3Q61124 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Cln3Q61124 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Cln3Q61124 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cln3Q61124 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Cln3Q61124 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cln3Q61124 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Cln3Q61124 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cln3Q61124 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cln3Q61124 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cln3Q61124 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC16.83■□□□□ 0.28
Cln3Q61124 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cln3Q61124 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Cln3Q61124 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC16.83■□□□□ 0.28
Cln3Q61124 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cln3Q61124 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cln3Q61124 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
Cln3Q61124 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC16.82■□□□□ 0.28
Cln3Q61124 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 AC159621.2-201ENSMUST00000223519 1326 ntBASIC16.82■□□□□ 0.28
Cln3Q61124 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC16.82■□□□□ 0.28
Cln3Q61124 Gm2810-201ENSMUST00000118681 990 ntBASIC16.82■□□□□ 0.28
Cln3Q61124 Gm12428-201ENSMUST00000119844 727 ntBASIC16.82■□□□□ 0.28
Cln3Q61124 Gm12151-201ENSMUST00000121374 290 ntBASIC16.82■□□□□ 0.28
Cln3Q61124 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC16.82■□□□□ 0.28
Cln3Q61124 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Cln3Q61124 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC16.82■□□□□ 0.28
Cln3Q61124 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 CT025535.1-201ENSMUST00000227172 491 ntBASIC16.82■□□□□ 0.28
Cln3Q61124 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
Cln3Q61124 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Cln3Q61124 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Cln3Q61124 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC16.82■□□□□ 0.28
Cln3Q61124 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Cln3Q61124 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Gm6415-201ENSMUST00000118488 348 ntBASIC16.81■□□□□ 0.28
Cln3Q61124 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC16.81■□□□□ 0.28
Cln3Q61124 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC16.81■□□□□ 0.28
Cln3Q61124 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC16.81■□□□□ 0.28
Cln3Q61124 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC16.81■□□□□ 0.28
Cln3Q61124 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cln3Q61124 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cln3Q61124 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cln3Q61124 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cln3Q61124 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cln3Q61124 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Cln3Q61124 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cln3Q61124 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cln3Q61124 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC16.8■□□□□ 0.28
Cln3Q61124 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cln3Q61124 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Cln3Q61124 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Cln3Q61124 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC16.8■□□□□ 0.28
Cln3Q61124 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC16.8■□□□□ 0.28
Cln3Q61124 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC16.8■□□□□ 0.28
Cln3Q61124 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC16.8■□□□□ 0.28
Cln3Q61124 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC16.8■□□□□ 0.28
Cln3Q61124 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC16.8■□□□□ 0.28
Cln3Q61124 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cln3Q61124 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cln3Q61124 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cln3Q61124 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cln3Q61124 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC16.8■□□□□ 0.28
Cln3Q61124 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 58.8 ms