Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Gm14767-201ENSMUST00000121559 586 ntBASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Gm29541-201ENSMUST00000191351 678 ntBASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Nkx2-4Q9EQM3 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Gm3365-201ENSMUST00000216296 1480 ntBASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Gm25857-201ENSMUST00000082788 129 ntBASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
Nkx2-4Q9EQM3 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Gm45774-201ENSMUST00000211992 2665 ntBASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Gm42934-201ENSMUST00000196920 1345 ntBASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Gm13015-201ENSMUST00000118674 204 ntBASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Gm28630-201ENSMUST00000187806 498 ntBASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Gm18049-201ENSMUST00000208909 581 ntBASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 AC125350.2-201ENSMUST00000224737 727 ntBASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Nkx2-4Q9EQM3 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Nkx2-4Q9EQM3 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Nkx2-4Q9EQM3 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Nkx2-4Q9EQM3 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Nkx2-4Q9EQM3 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.77■□□□□ 0.11
Nkx2-4Q9EQM3 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
Nkx2-4Q9EQM3 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Gm15483-201ENSMUST00000120338 456 ntBASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Nkx2-4Q9EQM3 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms