Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Gm9867-201ENSMUST00000192212 2647 ntBASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Gm15173-201ENSMUST00000122049 433 ntBASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 AC159093.1-201ENSMUST00000227779 380 ntBASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Gm7461-201ENSMUST00000058918 827 ntBASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Upf3bQ3ULL6 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3bQ3ULL6 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Upf3bQ3ULL6 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Gm7222-201ENSMUST00000117512 906 ntBASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 AC160980.1-201ENSMUST00000224136 970 ntBASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Ptprs-211ENSMUST00000223859 5588 ntBASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Gm45212-201ENSMUST00000205831 3403 ntBASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Upf3bQ3ULL6 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC16.5■□□□□ 0.23
Upf3bQ3ULL6 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC16.5■□□□□ 0.23
Upf3bQ3ULL6 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3bQ3ULL6 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC16.5■□□□□ 0.23
Upf3bQ3ULL6 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3bQ3ULL6 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3bQ3ULL6 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3bQ3ULL6 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3bQ3ULL6 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Upf3bQ3ULL6 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3bQ3ULL6 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3bQ3ULL6 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3bQ3ULL6 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Upf3bQ3ULL6 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms