Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm27533-201ENSMUST00000183800 152 ntBASIC17.94■□□□□ 0.46
Col1a1P11087 Gm44855-201ENSMUST00000205725 362 ntBASIC17.94■□□□□ 0.46
Col1a1P11087 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC17.94■□□□□ 0.46
Col1a1P11087 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Col1a1P11087 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col1a1P11087 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col1a1P11087 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC17.94■□□□□ 0.46
Col1a1P11087 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Col1a1P11087 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col1a1P11087 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Col1a1P11087 Syt7-204ENSMUST00000223586 1344 ntBASIC17.93■□□□□ 0.46
Col1a1P11087 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Col1a1P11087 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Col1a1P11087 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Col1a1P11087 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC17.93■□□□□ 0.46
Col1a1P11087 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
Col1a1P11087 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Gm44344-201ENSMUST00000200287 129 ntBASIC17.93■□□□□ 0.46
Col1a1P11087 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
Col1a1P11087 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col1a1P11087 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.92■□□□□ 0.46
Col1a1P11087 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Col1a1P11087 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC17.92■□□□□ 0.46
Col1a1P11087 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC17.92■□□□□ 0.46
Col1a1P11087 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Col1a1P11087 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
Col1a1P11087 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
Col1a1P11087 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Gm27838-201ENSMUST00000184829 128 ntBASIC17.92■□□□□ 0.46
Col1a1P11087 CT009510.1-201ENSMUST00000227972 270 ntBASIC17.92■□□□□ 0.46
Col1a1P11087 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC17.92■□□□□ 0.46
Col1a1P11087 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col1a1P11087 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
Col1a1P11087 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
Col1a1P11087 Syt7-205ENSMUST00000224135 1557 ntBASIC17.91■□□□□ 0.46
Col1a1P11087 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC17.91■□□□□ 0.46
Col1a1P11087 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Gm6539-201ENSMUST00000119157 1064 ntBASIC17.91■□□□□ 0.46
Col1a1P11087 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Gm24694-201ENSMUST00000180054 110 ntBASIC17.91■□□□□ 0.46
Col1a1P11087 Gm27663-201ENSMUST00000184839 110 ntBASIC17.91■□□□□ 0.46
Col1a1P11087 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
Col1a1P11087 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC17.91■□□□□ 0.46
Col1a1P11087 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Col1a1P11087 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col1a1P11087 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col1a1P11087 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Col1a1P11087 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col1a1P11087 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col1a1P11087 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Col1a1P11087 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col1a1P11087 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col1a1P11087 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col1a1P11087 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col1a1P11087 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms