Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc9Q8VC31 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc9Q8VC31 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc9Q8VC31 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc9Q8VC31 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc9Q8VC31 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc9Q8VC31 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc9Q8VC31 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
Ccdc9Q8VC31 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Ccdc9Q8VC31 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc9Q8VC31 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc9Q8VC31 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc9Q8VC31 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Gm19863-201ENSMUST00000192480 2218 ntBASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc9Q8VC31 Gm26513-201ENSMUST00000181802 2489 ntBASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Gm21596-201ENSMUST00000178049 1316 ntBASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc9Q8VC31 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Gm13401-201ENSMUST00000117074 291 ntBASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Gm12896-201ENSMUST00000118430 226 ntBASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Gm20049-201ENSMUST00000219950 730 ntBASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc9Q8VC31 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc9Q8VC31 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc9Q8VC31 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.66■□□□□ 0.58
Ccdc9Q8VC31 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC18.66■□□□□ 0.58
Ccdc9Q8VC31 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc9Q8VC31 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
Ccdc9Q8VC31 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc9Q8VC31 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc9Q8VC31 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc9Q8VC31 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc9Q8VC31 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc9Q8VC31 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ccdc9Q8VC31 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ccdc9Q8VC31 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Ccdc9Q8VC31 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC18.65■□□□□ 0.58
Ccdc9Q8VC31 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ccdc9Q8VC31 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ccdc9Q8VC31 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ccdc9Q8VC31 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms