Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL7A1Q02388 NFYC-AS1-201ENST00000606277 1687 ntBASIC13.13□□□□□ -0.31
COL7A1Q02388 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL7A1Q02388 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.12□□□□□ -0.31
COL7A1Q02388 AC108751.1-201ENST00000490852 363 ntBASIC13.12□□□□□ -0.31
COL7A1Q02388 AC107918.4-202ENST00000641623 219 ntBASIC13.12□□□□□ -0.31
COL7A1Q02388 AC092865.6-201ENST00000642101 219 ntBASIC13.12□□□□□ -0.31
COL7A1Q02388 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC13.12□□□□□ -0.31
COL7A1Q02388 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC13.12□□□□□ -0.31
COL7A1Q02388 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC13.12□□□□□ -0.31
COL7A1Q02388 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 MTMR9LP-203ENST00000426597 1545 ntBASIC13.12□□□□□ -0.31
COL7A1Q02388 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
COL7A1Q02388 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC13.12□□□□□ -0.31
COL7A1Q02388 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
COL7A1Q02388 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 COPE-202ENST00000349893 948 ntTSL 2 BASIC13.12□□□□□ -0.31
COL7A1Q02388 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 RAB17-203ENST00000409576 466 ntTSL 3 BASIC13.12□□□□□ -0.31
COL7A1Q02388 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC13.12□□□□□ -0.31
COL7A1Q02388 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC13.12□□□□□ -0.31
COL7A1Q02388 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC13.12□□□□□ -0.31
COL7A1Q02388 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC13.12□□□□□ -0.31
COL7A1Q02388 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC13.12□□□□□ -0.31
COL7A1Q02388 AL139288.1-201ENST00000623748 933 ntBASIC13.12□□□□□ -0.31
COL7A1Q02388 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC13.12□□□□□ -0.31
COL7A1Q02388 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
COL7A1Q02388 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC13.12□□□□□ -0.31
COL7A1Q02388 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC13.12□□□□□ -0.31
COL7A1Q02388 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
COL7A1Q02388 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC13.12□□□□□ -0.31
COL7A1Q02388 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC13.12□□□□□ -0.31
COL7A1Q02388 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL7A1Q02388 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC13.12□□□□□ -0.31
COL7A1Q02388 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC13.12□□□□□ -0.31
COL7A1Q02388 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC13.12□□□□□ -0.31
COL7A1Q02388 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC13.11□□□□□ -0.31
COL7A1Q02388 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL7A1Q02388 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC13.11□□□□□ -0.31
COL7A1Q02388 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL7A1Q02388 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL7A1Q02388 KRT8P32-201ENST00000512863 1461 ntBASIC13.11□□□□□ -0.31
COL7A1Q02388 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC13.11□□□□□ -0.31
COL7A1Q02388 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC13.11□□□□□ -0.31
COL7A1Q02388 AC244107.1-201ENST00000442033 332 ntBASIC13.11□□□□□ -0.31
COL7A1Q02388 KRT18P2-201ENST00000447938 1258 ntBASIC13.11□□□□□ -0.31
COL7A1Q02388 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC13.11□□□□□ -0.31
COL7A1Q02388 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC13.11□□□□□ -0.31
COL7A1Q02388 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC13.11□□□□□ -0.31
COL7A1Q02388 AC005082.1-201ENST00000413042 2259 ntBASIC13.11□□□□□ -0.31
COL7A1Q02388 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC13.11□□□□□ -0.31
COL7A1Q02388 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC13.11□□□□□ -0.31
COL7A1Q02388 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL7A1Q02388 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL7A1Q02388 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC13.11□□□□□ -0.31
COL7A1Q02388 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL7A1Q02388 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL7A1Q02388 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
COL7A1Q02388 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC13.11□□□□□ -0.31
COL7A1Q02388 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC13.11□□□□□ -0.31
COL7A1Q02388 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL7A1Q02388 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC13.11□□□□□ -0.31
COL7A1Q02388 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC13.11□□□□□ -0.31
COL7A1Q02388 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC13.11□□□□□ -0.31
COL7A1Q02388 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC13.11□□□□□ -0.31
COL7A1Q02388 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL7A1Q02388 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
COL7A1Q02388 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
COL7A1Q02388 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC13.11□□□□□ -0.31
COL7A1Q02388 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC13.11□□□□□ -0.31
COL7A1Q02388 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC13.1□□□□□ -0.31
COL7A1Q02388 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC13.1□□□□□ -0.31
COL7A1Q02388 Z98044.1-201ENST00000632503 1764 ntBASIC13.1□□□□□ -0.31
COL7A1Q02388 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC13.1□□□□□ -0.31
COL7A1Q02388 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC13.1□□□□□ -0.31
COL7A1Q02388 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC13.1□□□□□ -0.31
COL7A1Q02388 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
COL7A1Q02388 AC093512.1-201ENST00000617969 520 ntBASIC13.1□□□□□ -0.31
COL7A1Q02388 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC13.1□□□□□ -0.31
COL7A1Q02388 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL7A1Q02388 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC13.1□□□□□ -0.31
COL7A1Q02388 TCF3P1-201ENST00000423021 1937 ntBASIC13.1□□□□□ -0.31
COL7A1Q02388 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC13.1□□□□□ -0.31
COL7A1Q02388 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC13.1□□□□□ -0.31
COL7A1Q02388 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC13.1□□□□□ -0.31
COL7A1Q02388 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL7A1Q02388 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL7A1Q02388 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms