Protein–RNA interactions for Protein: A0A075B633

Trav8n-2, T cell receptor alpha variable 8n-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8n-2A0A075B633 Gm5186-201ENSMUST00000218781 920 ntBASIC14.18□□□□□ -0.14
Trav8n-2A0A075B633 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC14.18□□□□□ -0.14
Trav8n-2A0A075B633 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav8n-2A0A075B633 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav8n-2A0A075B633 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Trav8n-2A0A075B633 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav8n-2A0A075B633 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Trav8n-2A0A075B633 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Trav8n-2A0A075B633 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav8n-2A0A075B633 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Trav8n-2A0A075B633 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Trav8n-2A0A075B633 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav8n-2A0A075B633 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
Trav8n-2A0A075B633 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav8n-2A0A075B633 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Gm12017-201ENSMUST00000122453 1003 ntBASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Gm24158-201ENSMUST00000175263 71 ntBASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Gm10253-201ENSMUST00000194270 940 ntBASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Gm20553-201ENSMUST00000204205 844 ntBASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Gm18057-201ENSMUST00000208220 503 ntBASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
Trav8n-2A0A075B633 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Nudt18-203ENSMUST00000228768 1578 ntBASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav8n-2A0A075B633 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav8n-2A0A075B633 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trav8n-2A0A075B633 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav8n-2A0A075B633 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trav8n-2A0A075B633 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav8n-2A0A075B633 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav8n-2A0A075B633 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav8n-2A0A075B633 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav8n-2A0A075B633 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav8n-2A0A075B633 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trav8n-2A0A075B633 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav8n-2A0A075B633 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav8n-2A0A075B633 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms