Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smco4Q9JIS3 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smco4Q9JIS3 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smco4Q9JIS3 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smco4Q9JIS3 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC18.36■□□□□ 0.53
Smco4Q9JIS3 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smco4Q9JIS3 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smco4Q9JIS3 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smco4Q9JIS3 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smco4Q9JIS3 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smco4Q9JIS3 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smco4Q9JIS3 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Smco4Q9JIS3 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Smco4Q9JIS3 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smco4Q9JIS3 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smco4Q9JIS3 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Smco4Q9JIS3 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smco4Q9JIS3 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.53
Smco4Q9JIS3 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Smco4Q9JIS3 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Smco4Q9JIS3 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smco4Q9JIS3 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smco4Q9JIS3 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smco4Q9JIS3 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smco4Q9JIS3 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smco4Q9JIS3 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC18.32■□□□□ 0.52
Smco4Q9JIS3 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smco4Q9JIS3 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smco4Q9JIS3 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smco4Q9JIS3 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smco4Q9JIS3 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Smco4Q9JIS3 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Smco4Q9JIS3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC18.31■□□□□ 0.52
Smco4Q9JIS3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
Smco4Q9JIS3 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.31■□□□□ 0.52
Smco4Q9JIS3 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Smco4Q9JIS3 Pcf11-205ENSMUST00000208255 1720 ntBASIC18.3■□□□□ 0.52
Smco4Q9JIS3 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC18.3■□□□□ 0.52
Smco4Q9JIS3 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Smco4Q9JIS3 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Smco4Q9JIS3 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Smco4Q9JIS3 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Smco4Q9JIS3 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Smco4Q9JIS3 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Smco4Q9JIS3 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Smco4Q9JIS3 Gm26766-202ENSMUST00000227544 2347 ntBASIC18.29■□□□□ 0.52
Smco4Q9JIS3 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Smco4Q9JIS3 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Smco4Q9JIS3 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
Smco4Q9JIS3 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Smco4Q9JIS3 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC18.28■□□□□ 0.52
Smco4Q9JIS3 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Smco4Q9JIS3 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smco4Q9JIS3 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smco4Q9JIS3 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smco4Q9JIS3 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smco4Q9JIS3 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Smco4Q9JIS3 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Smco4Q9JIS3 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Smco4Q9JIS3 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Smco4Q9JIS3 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Smco4Q9JIS3 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Smco4Q9JIS3 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Smco4Q9JIS3 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC18.26■□□□□ 0.51
Smco4Q9JIS3 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Smco4Q9JIS3 Gm6934-201ENSMUST00000194780 1905 ntBASIC18.25■□□□□ 0.51
Smco4Q9JIS3 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Smco4Q9JIS3 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Smco4Q9JIS3 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Smco4Q9JIS3 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Smco4Q9JIS3 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Smco4Q9JIS3 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Smco4Q9JIS3 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC18.24■□□□□ 0.51
Smco4Q9JIS3 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Smco4Q9JIS3 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Smco4Q9JIS3 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Smco4Q9JIS3 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Smco4Q9JIS3 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Smco4Q9JIS3 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Smco4Q9JIS3 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Smco4Q9JIS3 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Smco4Q9JIS3 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Smco4Q9JIS3 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Smco4Q9JIS3 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Smco4Q9JIS3 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Smco4Q9JIS3 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Smco4Q9JIS3 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Smco4Q9JIS3 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Smco4Q9JIS3 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Smco4Q9JIS3 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
Smco4Q9JIS3 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Smco4Q9JIS3 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Smco4Q9JIS3 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smco4Q9JIS3 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Smco4Q9JIS3 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smco4Q9JIS3 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smco4Q9JIS3 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Smco4Q9JIS3 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smco4Q9JIS3 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smco4Q9JIS3 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 60.3 ms