Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm42699-201ENSMUST00000198104 1657 ntBASIC23.91■■□□□ 1.42
Ddx56Q9D0R4 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Ddx56Q9D0R4 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ddx56Q9D0R4 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Ddx56Q9D0R4 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ddx56Q9D0R4 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ddx56Q9D0R4 Mir3960-201ENSMUST00000198213 73 ntBASIC23.89■■□□□ 1.41
Ddx56Q9D0R4 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ddx56Q9D0R4 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ddx56Q9D0R4 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ddx56Q9D0R4 AC154454.1-201ENSMUST00000225253 216 ntBASIC23.87■■□□□ 1.41
Ddx56Q9D0R4 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
Ddx56Q9D0R4 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ddx56Q9D0R4 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ddx56Q9D0R4 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ddx56Q9D0R4 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ddx56Q9D0R4 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ddx56Q9D0R4 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ddx56Q9D0R4 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
Ddx56Q9D0R4 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC23.85■■□□□ 1.41
Ddx56Q9D0R4 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Ddx56Q9D0R4 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ddx56Q9D0R4 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ddx56Q9D0R4 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ddx56Q9D0R4 Gm9812-201ENSMUST00000061934 968 ntBASIC23.84■■□□□ 1.41
Ddx56Q9D0R4 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ddx56Q9D0R4 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ddx56Q9D0R4 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ddx56Q9D0R4 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Ddx56Q9D0R4 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ddx56Q9D0R4 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
Ddx56Q9D0R4 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ddx56Q9D0R4 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC23.83■■□□□ 1.41
Ddx56Q9D0R4 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Ddx56Q9D0R4 Gm12818-201ENSMUST00000117562 1349 ntBASIC23.83■■□□□ 1.4
Ddx56Q9D0R4 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC23.83■■□□□ 1.4
Ddx56Q9D0R4 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ddx56Q9D0R4 AC167019.3-201ENSMUST00000228225 1266 ntBASIC23.82■■□□□ 1.4
Ddx56Q9D0R4 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
Ddx56Q9D0R4 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ddx56Q9D0R4 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ddx56Q9D0R4 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ddx56Q9D0R4 Gm45364-201ENSMUST00000210883 159 ntBASIC23.81■■□□□ 1.4
Ddx56Q9D0R4 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ddx56Q9D0R4 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Ddx56Q9D0R4 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC23.79■■□□□ 1.4
Ddx56Q9D0R4 AC122317.2-201ENSMUST00000218708 1248 ntBASIC23.79■■□□□ 1.4
Ddx56Q9D0R4 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
Ddx56Q9D0R4 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Ddx56Q9D0R4 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
Ddx56Q9D0R4 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC23.78■■□□□ 1.4
Ddx56Q9D0R4 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ddx56Q9D0R4 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ddx56Q9D0R4 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ddx56Q9D0R4 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC23.77■■□□□ 1.4
Ddx56Q9D0R4 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ddx56Q9D0R4 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Ddx56Q9D0R4 Il17rd-202ENSMUST00000223942 2186 ntBASIC23.76■■□□□ 1.39
Ddx56Q9D0R4 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ddx56Q9D0R4 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC23.76■■□□□ 1.39
Ddx56Q9D0R4 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC23.76■■□□□ 1.39
Ddx56Q9D0R4 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ddx56Q9D0R4 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Ddx56Q9D0R4 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Ddx56Q9D0R4 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ddx56Q9D0R4 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ddx56Q9D0R4 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ddx56Q9D0R4 AC153911.1-201ENSMUST00000220378 758 ntBASIC23.75■■□□□ 1.39
Ddx56Q9D0R4 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC23.74■■□□□ 1.39
Ddx56Q9D0R4 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Ddx56Q9D0R4 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
Ddx56Q9D0R4 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ddx56Q9D0R4 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC23.73■■□□□ 1.39
Ddx56Q9D0R4 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ddx56Q9D0R4 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Ddx56Q9D0R4 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ddx56Q9D0R4 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ddx56Q9D0R4 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Ddx56Q9D0R4 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC23.72■■□□□ 1.39
Ddx56Q9D0R4 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC23.72■■□□□ 1.39
Ddx56Q9D0R4 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Ddx56Q9D0R4 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
Ddx56Q9D0R4 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC23.71■■□□□ 1.39
Ddx56Q9D0R4 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Ddx56Q9D0R4 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
Ddx56Q9D0R4 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
Ddx56Q9D0R4 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Ddx56Q9D0R4 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC23.69■■□□□ 1.38
Ddx56Q9D0R4 Pkd1-207ENSMUST00000228550 1050 ntBASIC23.69■■□□□ 1.38
Ddx56Q9D0R4 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Ddx56Q9D0R4 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ddx56Q9D0R4 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Ddx56Q9D0R4 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ddx56Q9D0R4 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC23.67■■□□□ 1.38
Ddx56Q9D0R4 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC23.67■■□□□ 1.38
Ddx56Q9D0R4 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ddx56Q9D0R4 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ddx56Q9D0R4 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Ddx56Q9D0R4 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ddx56Q9D0R4 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms