Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
Vps39Q8R5L3 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Vps39Q8R5L3 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Vps39Q8R5L3 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC22.71■■□□□ 1.23
Vps39Q8R5L3 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.23
Vps39Q8R5L3 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Vps39Q8R5L3 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Vps39Q8R5L3 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Vps39Q8R5L3 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC22.69■■□□□ 1.22
Vps39Q8R5L3 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Vps39Q8R5L3 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC22.68■■□□□ 1.22
Vps39Q8R5L3 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
Vps39Q8R5L3 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
Vps39Q8R5L3 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Vps39Q8R5L3 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Vps39Q8R5L3 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Vps39Q8R5L3 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Vps39Q8R5L3 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Vps39Q8R5L3 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
Vps39Q8R5L3 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Vps39Q8R5L3 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Vps39Q8R5L3 AC131739.1-201ENSMUST00000221692 1245 ntBASIC22.66■■□□□ 1.22
Vps39Q8R5L3 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Vps39Q8R5L3 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
Vps39Q8R5L3 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Vps39Q8R5L3 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Vps39Q8R5L3 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Vps39Q8R5L3 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Vps39Q8R5L3 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Vps39Q8R5L3 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Vps39Q8R5L3 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC22.64■■□□□ 1.21
Vps39Q8R5L3 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Vps39Q8R5L3 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC22.64■■□□□ 1.21
Vps39Q8R5L3 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC22.64■■□□□ 1.21
Vps39Q8R5L3 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Vps39Q8R5L3 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC22.63■■□□□ 1.21
Vps39Q8R5L3 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Vps39Q8R5L3 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Vps39Q8R5L3 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Vps39Q8R5L3 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Vps39Q8R5L3 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Vps39Q8R5L3 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Vps39Q8R5L3 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC22.61■■□□□ 1.21
Vps39Q8R5L3 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC22.61■■□□□ 1.21
Vps39Q8R5L3 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Vps39Q8R5L3 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Vps39Q8R5L3 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Vps39Q8R5L3 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Vps39Q8R5L3 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
Vps39Q8R5L3 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Vps39Q8R5L3 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Vps39Q8R5L3 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
Vps39Q8R5L3 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
Vps39Q8R5L3 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
Vps39Q8R5L3 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
Vps39Q8R5L3 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC22.58■■□□□ 1.21
Vps39Q8R5L3 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Vps39Q8R5L3 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.2
Vps39Q8R5L3 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Vps39Q8R5L3 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC22.57■■□□□ 1.2
Vps39Q8R5L3 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Vps39Q8R5L3 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Vps39Q8R5L3 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Vps39Q8R5L3 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC22.56■■□□□ 1.2
Vps39Q8R5L3 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Vps39Q8R5L3 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC22.55■■□□□ 1.2
Vps39Q8R5L3 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Vps39Q8R5L3 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Vps39Q8R5L3 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Vps39Q8R5L3 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Vps39Q8R5L3 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Vps39Q8R5L3 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Vps39Q8R5L3 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Vps39Q8R5L3 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Vps39Q8R5L3 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Vps39Q8R5L3 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Vps39Q8R5L3 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
Vps39Q8R5L3 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Vps39Q8R5L3 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Vps39Q8R5L3 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Vps39Q8R5L3 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Vps39Q8R5L3 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Vps39Q8R5L3 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Vps39Q8R5L3 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Vps39Q8R5L3 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Vps39Q8R5L3 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Vps39Q8R5L3 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Vps39Q8R5L3 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Vps39Q8R5L3 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Vps39Q8R5L3 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
Vps39Q8R5L3 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
Vps39Q8R5L3 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC22.49■■□□□ 1.19
Vps39Q8R5L3 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Vps39Q8R5L3 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
Vps39Q8R5L3 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC22.48■■□□□ 1.19
Vps39Q8R5L3 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC22.48■■□□□ 1.19
Vps39Q8R5L3 Gm4799-201ENSMUST00000095396 657 ntBASIC22.48■■□□□ 1.19
Vps39Q8R5L3 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Vps39Q8R5L3 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Vps39Q8R5L3 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms