Protein–RNA interactions for Protein: Q8R4G9

Chrna3, Neuronal acetylcholine receptor subunit alpha-3, mousemouse

Predictions only

Length 499 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chrna3Q8R4G9 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chrna3Q8R4G9 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Chrna3Q8R4G9 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Chrna3Q8R4G9 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chrna3Q8R4G9 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC22.29■■□□□ 1.16
Chrna3Q8R4G9 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chrna3Q8R4G9 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chrna3Q8R4G9 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chrna3Q8R4G9 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chrna3Q8R4G9 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
Chrna3Q8R4G9 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chrna3Q8R4G9 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC22.28■■□□□ 1.16
Chrna3Q8R4G9 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Chrna3Q8R4G9 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Chrna3Q8R4G9 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chrna3Q8R4G9 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chrna3Q8R4G9 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
Chrna3Q8R4G9 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Chrna3Q8R4G9 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chrna3Q8R4G9 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chrna3Q8R4G9 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chrna3Q8R4G9 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chrna3Q8R4G9 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chrna3Q8R4G9 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
Chrna3Q8R4G9 Cap2-205ENSMUST00000225824 1634 ntBASIC22.24■■□□□ 1.15
Chrna3Q8R4G9 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC22.24■■□□□ 1.15
Chrna3Q8R4G9 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Chrna3Q8R4G9 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Chrna3Q8R4G9 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC22.23■■□□□ 1.15
Chrna3Q8R4G9 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC22.23■■□□□ 1.15
Chrna3Q8R4G9 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Chrna3Q8R4G9 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Chrna3Q8R4G9 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Chrna3Q8R4G9 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Chrna3Q8R4G9 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC22.22■■□□□ 1.15
Chrna3Q8R4G9 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Chrna3Q8R4G9 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
Chrna3Q8R4G9 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Chrna3Q8R4G9 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Chrna3Q8R4G9 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Chrna3Q8R4G9 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Chrna3Q8R4G9 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC22.2■■□□□ 1.14
Chrna3Q8R4G9 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC22.2■■□□□ 1.14
Chrna3Q8R4G9 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC22.2■■□□□ 1.14
Chrna3Q8R4G9 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Chrna3Q8R4G9 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Chrna3Q8R4G9 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
Chrna3Q8R4G9 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Chrna3Q8R4G9 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Chrna3Q8R4G9 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Chrna3Q8R4G9 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Chrna3Q8R4G9 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Chrna3Q8R4G9 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Chrna3Q8R4G9 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Chrna3Q8R4G9 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
Chrna3Q8R4G9 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Chrna3Q8R4G9 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Chrna3Q8R4G9 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC22.18■■□□□ 1.14
Chrna3Q8R4G9 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Chrna3Q8R4G9 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Chrna3Q8R4G9 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC22.17■■□□□ 1.14
Chrna3Q8R4G9 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Chrna3Q8R4G9 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Chrna3Q8R4G9 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Chrna3Q8R4G9 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Chrna3Q8R4G9 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Chrna3Q8R4G9 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
Chrna3Q8R4G9 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Chrna3Q8R4G9 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Chrna3Q8R4G9 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Chrna3Q8R4G9 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Chrna3Q8R4G9 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC22.15■■□□□ 1.14
Chrna3Q8R4G9 Gm12366-201ENSMUST00000121722 873 ntBASIC22.15■■□□□ 1.14
Chrna3Q8R4G9 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC22.15■■□□□ 1.14
Chrna3Q8R4G9 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC22.15■■□□□ 1.14
Chrna3Q8R4G9 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC22.15■■□□□ 1.14
Chrna3Q8R4G9 Gm5786-201ENSMUST00000085368 882 ntBASIC22.15■■□□□ 1.14
Chrna3Q8R4G9 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Chrna3Q8R4G9 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Chrna3Q8R4G9 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC22.14■■□□□ 1.14
Chrna3Q8R4G9 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Chrna3Q8R4G9 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Chrna3Q8R4G9 Gm27502-201ENSMUST00000183495 199 ntBASIC22.14■■□□□ 1.13
Chrna3Q8R4G9 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC22.14■■□□□ 1.13
Chrna3Q8R4G9 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC22.14■■□□□ 1.13
Chrna3Q8R4G9 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Chrna3Q8R4G9 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Chrna3Q8R4G9 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Chrna3Q8R4G9 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Chrna3Q8R4G9 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Chrna3Q8R4G9 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Chrna3Q8R4G9 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Chrna3Q8R4G9 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Chrna3Q8R4G9 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC22.12■■□□□ 1.13
Chrna3Q8R4G9 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Chrna3Q8R4G9 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Chrna3Q8R4G9 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
Chrna3Q8R4G9 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
Chrna3Q8R4G9 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC22.11■■□□□ 1.13
Chrna3Q8R4G9 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC22.11■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms