Protein–RNA interactions for Protein: Q8R4G9

Chrna3, Neuronal acetylcholine receptor subunit alpha-3, mousemouse

Predictions only

Length 499 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chrna3Q8R4G9 Gm25239-201ENSMUST00000174915 86 ntBASIC37.12■■■■□ 3.53
Chrna3Q8R4G9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
Chrna3Q8R4G9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 3
Chrna3Q8R4G9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
Chrna3Q8R4G9 Gm15042-201ENSMUST00000120212 883 ntBASIC32.64■■■□□ 2.82
Chrna3Q8R4G9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Chrna3Q8R4G9 Gm24109-201ENSMUST00000175489 103 ntBASIC32.06■■■□□ 2.72
Chrna3Q8R4G9 Gm15045-201ENSMUST00000117359 883 ntBASIC31.93■■■□□ 2.7
Chrna3Q8R4G9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC31.81■■■□□ 2.68
Chrna3Q8R4G9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Chrna3Q8R4G9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
Chrna3Q8R4G9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Chrna3Q8R4G9 Gm23366-201ENSMUST00000175022 89 ntBASIC31.06■■■□□ 2.56
Chrna3Q8R4G9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
Chrna3Q8R4G9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Chrna3Q8R4G9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC30.62■■■□□ 2.49
Chrna3Q8R4G9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Chrna3Q8R4G9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
Chrna3Q8R4G9 Psd-208ENSMUST00000224556 2034 ntBASIC30.33■■■□□ 2.45
Chrna3Q8R4G9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Chrna3Q8R4G9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Chrna3Q8R4G9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
Chrna3Q8R4G9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC30.13■■■□□ 2.41
Chrna3Q8R4G9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
Chrna3Q8R4G9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.05■■■□□ 2.4
Chrna3Q8R4G9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Chrna3Q8R4G9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC29.97■■■□□ 2.39
Chrna3Q8R4G9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC29.91■■■□□ 2.38
Chrna3Q8R4G9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
Chrna3Q8R4G9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC29.68■■■□□ 2.34
Chrna3Q8R4G9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Chrna3Q8R4G9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC29.5■■■□□ 2.31
Chrna3Q8R4G9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC29.46■■■□□ 2.31
Chrna3Q8R4G9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
Chrna3Q8R4G9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Chrna3Q8R4G9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Chrna3Q8R4G9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Chrna3Q8R4G9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
Chrna3Q8R4G9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC29.23■■■□□ 2.27
Chrna3Q8R4G9 Gm25238-201ENSMUST00000174914 89 ntBASIC29.23■■■□□ 2.27
Chrna3Q8R4G9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
Chrna3Q8R4G9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC28.94■■■□□ 2.22
Chrna3Q8R4G9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Chrna3Q8R4G9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Chrna3Q8R4G9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
Chrna3Q8R4G9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Chrna3Q8R4G9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Chrna3Q8R4G9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC28.7■■■□□ 2.18
Chrna3Q8R4G9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC28.68■■■□□ 2.18
Chrna3Q8R4G9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Chrna3Q8R4G9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.66■■■□□ 2.18
Chrna3Q8R4G9 Gm27325-201ENSMUST00000175467 74 ntBASIC28.64■■■□□ 2.18
Chrna3Q8R4G9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Chrna3Q8R4G9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Chrna3Q8R4G9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
Chrna3Q8R4G9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
Chrna3Q8R4G9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC28.4■■■□□ 2.14
Chrna3Q8R4G9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC28.39■■■□□ 2.14
Chrna3Q8R4G9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC28.33■■■□□ 2.13
Chrna3Q8R4G9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Chrna3Q8R4G9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Chrna3Q8R4G9 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.29■■■□□ 2.12
Chrna3Q8R4G9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
Chrna3Q8R4G9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
Chrna3Q8R4G9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Chrna3Q8R4G9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.23■■■□□ 2.11
Chrna3Q8R4G9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Chrna3Q8R4G9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
Chrna3Q8R4G9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Chrna3Q8R4G9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Chrna3Q8R4G9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
Chrna3Q8R4G9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.13■■■□□ 2.09
Chrna3Q8R4G9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.02■■■□□ 2.08
Chrna3Q8R4G9 Rab21-202ENSMUST00000218831 843 ntBASIC28■■■□□ 2.07
Chrna3Q8R4G9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Chrna3Q8R4G9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC27.93■■■□□ 2.06
Chrna3Q8R4G9 Gm25262-201ENSMUST00000174934 133 ntBASIC27.93■■■□□ 2.06
Chrna3Q8R4G9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC27.89■■■□□ 2.06
Chrna3Q8R4G9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC27.89■■■□□ 2.06
Chrna3Q8R4G9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Chrna3Q8R4G9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Chrna3Q8R4G9 Gm42596-201ENSMUST00000196305 1958 ntBASIC27.83■■■□□ 2.05
Chrna3Q8R4G9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
Chrna3Q8R4G9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Chrna3Q8R4G9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.03
Chrna3Q8R4G9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
Chrna3Q8R4G9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC27.63■■■□□ 2.01
Chrna3Q8R4G9 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Chrna3Q8R4G9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC27.57■■■□□ 2
Chrna3Q8R4G9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC27.55■■■□□ 2
Chrna3Q8R4G9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC27.55■■■□□ 2
Chrna3Q8R4G9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC27.54■■■□□ 2
Chrna3Q8R4G9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC27.46■■□□□ 1.99
Chrna3Q8R4G9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Chrna3Q8R4G9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
Chrna3Q8R4G9 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Chrna3Q8R4G9 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
Chrna3Q8R4G9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC27.37■■□□□ 1.97
Chrna3Q8R4G9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC27.35■■□□□ 1.97
Chrna3Q8R4G9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC27.34■■□□□ 1.97
Retrieved 100 of 76,532 protein–RNA pairs in 110.4 ms