Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col6a6Q8C6K9 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col6a6Q8C6K9 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC20.87■□□□□ 0.93
Col6a6Q8C6K9 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col6a6Q8C6K9 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col6a6Q8C6K9 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.87■□□□□ 0.93
Col6a6Q8C6K9 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col6a6Q8C6K9 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col6a6Q8C6K9 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
Col6a6Q8C6K9 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col6a6Q8C6K9 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col6a6Q8C6K9 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col6a6Q8C6K9 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col6a6Q8C6K9 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Col6a6Q8C6K9 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col6a6Q8C6K9 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col6a6Q8C6K9 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Col6a6Q8C6K9 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Col6a6Q8C6K9 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Col6a6Q8C6K9 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col6a6Q8C6K9 Gm13238-201ENSMUST00000117655 780 ntBASIC20.85■□□□□ 0.93
Col6a6Q8C6K9 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.85■□□□□ 0.93
Col6a6Q8C6K9 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
Col6a6Q8C6K9 Rps24-207ENSMUST00000224568 714 ntBASIC20.85■□□□□ 0.93
Col6a6Q8C6K9 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col6a6Q8C6K9 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col6a6Q8C6K9 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Col6a6Q8C6K9 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Col6a6Q8C6K9 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Col6a6Q8C6K9 Gm14117-201ENSMUST00000122417 843 ntBASIC20.83■□□□□ 0.93
Col6a6Q8C6K9 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Col6a6Q8C6K9 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col6a6Q8C6K9 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col6a6Q8C6K9 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col6a6Q8C6K9 AC153504.1-201ENSMUST00000218379 2290 ntBASIC20.82■□□□□ 0.92
Col6a6Q8C6K9 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
Col6a6Q8C6K9 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
Col6a6Q8C6K9 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
Col6a6Q8C6K9 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col6a6Q8C6K9 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.81■□□□□ 0.92
Col6a6Q8C6K9 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC20.81■□□□□ 0.92
Col6a6Q8C6K9 Gm45102-201ENSMUST00000207427 857 ntBASIC20.81■□□□□ 0.92
Col6a6Q8C6K9 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col6a6Q8C6K9 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col6a6Q8C6K9 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col6a6Q8C6K9 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Col6a6Q8C6K9 Gm44428-201ENSMUST00000204474 874 ntBASIC20.8■□□□□ 0.92
Col6a6Q8C6K9 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col6a6Q8C6K9 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.79■□□□□ 0.92
Col6a6Q8C6K9 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC20.79■□□□□ 0.92
Col6a6Q8C6K9 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col6a6Q8C6K9 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC20.78■□□□□ 0.92
Col6a6Q8C6K9 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.78■□□□□ 0.92
Col6a6Q8C6K9 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col6a6Q8C6K9 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col6a6Q8C6K9 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Col6a6Q8C6K9 Gm9959-201ENSMUST00000068277 390 ntBASIC20.77■□□□□ 0.92
Col6a6Q8C6K9 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
Col6a6Q8C6K9 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Col6a6Q8C6K9 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.76■□□□□ 0.91
Col6a6Q8C6K9 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col6a6Q8C6K9 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Col6a6Q8C6K9 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a6Q8C6K9 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
Col6a6Q8C6K9 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a6Q8C6K9 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a6Q8C6K9 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col6a6Q8C6K9 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.73■□□□□ 0.91
Col6a6Q8C6K9 Gm15820-201ENSMUST00000201566 728 ntBASIC20.73■□□□□ 0.91
Col6a6Q8C6K9 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col6a6Q8C6K9 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col6a6Q8C6K9 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col6a6Q8C6K9 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col6a6Q8C6K9 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a6Q8C6K9 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a6Q8C6K9 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Col6a6Q8C6K9 Nsd1-203ENSMUST00000224156 1149 ntBASIC20.69■□□□□ 0.9
Col6a6Q8C6K9 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC20.68■□□□□ 0.9
Col6a6Q8C6K9 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC20.68■□□□□ 0.9
Col6a6Q8C6K9 Gm45444-201ENSMUST00000211394 898 ntBASIC20.68■□□□□ 0.9
Col6a6Q8C6K9 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Col6a6Q8C6K9 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a6Q8C6K9 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a6Q8C6K9 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Col6a6Q8C6K9 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a6Q8C6K9 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a6Q8C6K9 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Col6a6Q8C6K9 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20.67■□□□□ 0.9
Col6a6Q8C6K9 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a6Q8C6K9 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Col6a6Q8C6K9 Amer2-203ENSMUST00000225247 2662 ntBASIC20.66■□□□□ 0.9
Col6a6Q8C6K9 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.66■□□□□ 0.9
Col6a6Q8C6K9 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a6Q8C6K9 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
Col6a6Q8C6K9 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a6Q8C6K9 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Col6a6Q8C6K9 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a6Q8C6K9 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Col6a6Q8C6K9 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Col6a6Q8C6K9 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms