Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ubfd1Q78JW9 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC22.31■■□□□ 1.16
Ubfd1Q78JW9 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ubfd1Q78JW9 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Ubfd1Q78JW9 Gm7332-201ENSMUST00000118351 454 ntBASIC22.3■■□□□ 1.16
Ubfd1Q78JW9 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
Ubfd1Q78JW9 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC22.3■■□□□ 1.16
Ubfd1Q78JW9 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Ubfd1Q78JW9 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC22.29■■□□□ 1.16
Ubfd1Q78JW9 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Ubfd1Q78JW9 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ubfd1Q78JW9 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ubfd1Q78JW9 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ubfd1Q78JW9 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
Ubfd1Q78JW9 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ubfd1Q78JW9 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ubfd1Q78JW9 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC22.26■■□□□ 1.15
Ubfd1Q78JW9 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
Ubfd1Q78JW9 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Ubfd1Q78JW9 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Ubfd1Q78JW9 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC22.24■■□□□ 1.15
Ubfd1Q78JW9 AC151971.4-201ENSMUST00000214717 704 ntBASIC22.24■■□□□ 1.15
Ubfd1Q78JW9 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Ubfd1Q78JW9 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Ubfd1Q78JW9 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Ubfd1Q78JW9 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC22.24■■□□□ 1.15
Ubfd1Q78JW9 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC22.23■■□□□ 1.15
Ubfd1Q78JW9 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC22.23■■□□□ 1.15
Ubfd1Q78JW9 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Ubfd1Q78JW9 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ubfd1Q78JW9 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ubfd1Q78JW9 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Ubfd1Q78JW9 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ubfd1Q78JW9 Gm44428-201ENSMUST00000204474 874 ntBASIC22.22■■□□□ 1.15
Ubfd1Q78JW9 AC122428.3-201ENSMUST00000215551 2290 ntBASIC22.22■■□□□ 1.15
Ubfd1Q78JW9 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ubfd1Q78JW9 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ubfd1Q78JW9 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
Ubfd1Q78JW9 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ubfd1Q78JW9 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Ubfd1Q78JW9 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
Ubfd1Q78JW9 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ubfd1Q78JW9 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ubfd1Q78JW9 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC22.19■■□□□ 1.14
Ubfd1Q78JW9 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ubfd1Q78JW9 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC22.18■■□□□ 1.14
Ubfd1Q78JW9 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Ubfd1Q78JW9 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC22.18■■□□□ 1.14
Ubfd1Q78JW9 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ubfd1Q78JW9 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ubfd1Q78JW9 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ubfd1Q78JW9 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ubfd1Q78JW9 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC22.17■■□□□ 1.14
Ubfd1Q78JW9 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ubfd1Q78JW9 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ubfd1Q78JW9 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC22.17■■□□□ 1.14
Ubfd1Q78JW9 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC22.17■■□□□ 1.14
Ubfd1Q78JW9 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Ubfd1Q78JW9 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Ubfd1Q78JW9 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Ubfd1Q78JW9 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Ubfd1Q78JW9 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Ubfd1Q78JW9 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ubfd1Q78JW9 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ubfd1Q78JW9 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Ubfd1Q78JW9 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Ubfd1Q78JW9 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC22.15■■□□□ 1.14
Ubfd1Q78JW9 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ubfd1Q78JW9 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Ubfd1Q78JW9 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
Ubfd1Q78JW9 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ubfd1Q78JW9 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Ubfd1Q78JW9 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Ubfd1Q78JW9 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Ubfd1Q78JW9 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC22.13■■□□□ 1.13
Ubfd1Q78JW9 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC22.13■■□□□ 1.13
Ubfd1Q78JW9 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ubfd1Q78JW9 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ubfd1Q78JW9 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC22.12■■□□□ 1.13
Ubfd1Q78JW9 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ubfd1Q78JW9 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ubfd1Q78JW9 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ubfd1Q78JW9 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ubfd1Q78JW9 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ubfd1Q78JW9 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Ubfd1Q78JW9 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Ubfd1Q78JW9 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ubfd1Q78JW9 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ubfd1Q78JW9 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ubfd1Q78JW9 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Ubfd1Q78JW9 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ubfd1Q78JW9 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC22.11■■□□□ 1.13
Ubfd1Q78JW9 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ubfd1Q78JW9 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ubfd1Q78JW9 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ubfd1Q78JW9 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ubfd1Q78JW9 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC22.1■■□□□ 1.13
Ubfd1Q78JW9 Gm10420-201ENSMUST00000121713 882 ntBASIC22.09■■□□□ 1.13
Ubfd1Q78JW9 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ubfd1Q78JW9 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 74.9 ms