Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Mir3960-201ENSMUST00000198213 73 ntBASIC25.35■■□□□ 1.65
Smarca1Q6PGB8 Gm13889-201ENSMUST00000099689 1386 ntBASIC25.34■■□□□ 1.65
Smarca1Q6PGB8 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
Smarca1Q6PGB8 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
Smarca1Q6PGB8 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Smarca1Q6PGB8 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
Smarca1Q6PGB8 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
Smarca1Q6PGB8 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Smarca1Q6PGB8 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC25.32■■□□□ 1.64
Smarca1Q6PGB8 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Smarca1Q6PGB8 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Smarca1Q6PGB8 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
Smarca1Q6PGB8 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Smarca1Q6PGB8 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
Smarca1Q6PGB8 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC25.3■■□□□ 1.64
Smarca1Q6PGB8 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Smarca1Q6PGB8 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Smarca1Q6PGB8 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Smarca1Q6PGB8 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Smarca1Q6PGB8 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Smarca1Q6PGB8 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Smarca1Q6PGB8 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Smarca1Q6PGB8 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC25.28■■□□□ 1.64
Smarca1Q6PGB8 Pkd1-207ENSMUST00000228550 1050 ntBASIC25.28■■□□□ 1.64
Smarca1Q6PGB8 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Smarca1Q6PGB8 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
Smarca1Q6PGB8 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Smarca1Q6PGB8 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Smarca1Q6PGB8 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
Smarca1Q6PGB8 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Smarca1Q6PGB8 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Smarca1Q6PGB8 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Smarca1Q6PGB8 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Smarca1Q6PGB8 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
Smarca1Q6PGB8 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC25.26■■□□□ 1.63
Smarca1Q6PGB8 Gm45364-201ENSMUST00000210883 159 ntBASIC25.26■■□□□ 1.63
Smarca1Q6PGB8 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Smarca1Q6PGB8 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Smarca1Q6PGB8 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Smarca1Q6PGB8 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Smarca1Q6PGB8 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
Smarca1Q6PGB8 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Smarca1Q6PGB8 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Smarca1Q6PGB8 Gm12818-201ENSMUST00000117562 1349 ntBASIC25.23■■□□□ 1.63
Smarca1Q6PGB8 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Smarca1Q6PGB8 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Smarca1Q6PGB8 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC25.22■■□□□ 1.63
Smarca1Q6PGB8 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
Smarca1Q6PGB8 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Smarca1Q6PGB8 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Smarca1Q6PGB8 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Smarca1Q6PGB8 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
Smarca1Q6PGB8 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
Smarca1Q6PGB8 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.62
Smarca1Q6PGB8 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC25.2■■□□□ 1.62
Smarca1Q6PGB8 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Smarca1Q6PGB8 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Smarca1Q6PGB8 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Smarca1Q6PGB8 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Smarca1Q6PGB8 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
Smarca1Q6PGB8 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
Smarca1Q6PGB8 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Smarca1Q6PGB8 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
Smarca1Q6PGB8 Gm42699-201ENSMUST00000198104 1657 ntBASIC25.19■■□□□ 1.62
Smarca1Q6PGB8 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
Smarca1Q6PGB8 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Smarca1Q6PGB8 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Smarca1Q6PGB8 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Smarca1Q6PGB8 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Smarca1Q6PGB8 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Smarca1Q6PGB8 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
Smarca1Q6PGB8 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
Smarca1Q6PGB8 Scarna2-201ENSMUST00000157560 414 ntBASIC25.18■■□□□ 1.62
Smarca1Q6PGB8 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Smarca1Q6PGB8 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Smarca1Q6PGB8 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Smarca1Q6PGB8 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
Smarca1Q6PGB8 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Smarca1Q6PGB8 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Smarca1Q6PGB8 Gm9806-201ENSMUST00000051080 552 ntBASIC25.17■■□□□ 1.62
Smarca1Q6PGB8 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Smarca1Q6PGB8 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Smarca1Q6PGB8 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
Smarca1Q6PGB8 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Smarca1Q6PGB8 Gm9812-201ENSMUST00000061934 968 ntBASIC25.16■■□□□ 1.62
Smarca1Q6PGB8 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Smarca1Q6PGB8 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Smarca1Q6PGB8 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Smarca1Q6PGB8 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
Smarca1Q6PGB8 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Smarca1Q6PGB8 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Smarca1Q6PGB8 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Smarca1Q6PGB8 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
Smarca1Q6PGB8 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Smarca1Q6PGB8 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
Smarca1Q6PGB8 Gm4419-202ENSMUST00000226239 1431 ntBASIC25.12■■□□□ 1.61
Smarca1Q6PGB8 Gm11687-201ENSMUST00000118911 886 ntBASIC25.12■■□□□ 1.61
Smarca1Q6PGB8 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC25.12■■□□□ 1.61
Smarca1Q6PGB8 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Smarca1Q6PGB8 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
Retrieved 100 of 76,532 protein–RNA pairs in 15.2 ms