Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Limch1Q3UH68 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
Limch1Q3UH68 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Limch1Q3UH68 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Limch1Q3UH68 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Limch1Q3UH68 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Limch1Q3UH68 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
Limch1Q3UH68 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
Limch1Q3UH68 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Limch1Q3UH68 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Limch1Q3UH68 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
Limch1Q3UH68 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
Limch1Q3UH68 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
Limch1Q3UH68 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
Limch1Q3UH68 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Limch1Q3UH68 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Limch1Q3UH68 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Limch1Q3UH68 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Limch1Q3UH68 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Limch1Q3UH68 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Limch1Q3UH68 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Limch1Q3UH68 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Limch1Q3UH68 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC26.64■■□□□ 1.86
Limch1Q3UH68 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Limch1Q3UH68 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Limch1Q3UH68 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Limch1Q3UH68 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Limch1Q3UH68 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
Limch1Q3UH68 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC26.62■■□□□ 1.85
Limch1Q3UH68 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
Limch1Q3UH68 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC26.61■■□□□ 1.85
Limch1Q3UH68 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
Limch1Q3UH68 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Limch1Q3UH68 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC26.61■■□□□ 1.85
Limch1Q3UH68 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Limch1Q3UH68 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Limch1Q3UH68 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Limch1Q3UH68 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Limch1Q3UH68 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Limch1Q3UH68 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.6■■□□□ 1.85
Limch1Q3UH68 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC26.6■■□□□ 1.85
Limch1Q3UH68 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
Limch1Q3UH68 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Limch1Q3UH68 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Limch1Q3UH68 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC26.58■■□□□ 1.85
Limch1Q3UH68 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC26.58■■□□□ 1.85
Limch1Q3UH68 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Limch1Q3UH68 Il17rd-202ENSMUST00000223942 2186 ntBASIC26.57■■□□□ 1.84
Limch1Q3UH68 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Limch1Q3UH68 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC26.57■■□□□ 1.84
Limch1Q3UH68 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC26.56■■□□□ 1.84
Limch1Q3UH68 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Limch1Q3UH68 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
Limch1Q3UH68 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC26.56■■□□□ 1.84
Limch1Q3UH68 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Limch1Q3UH68 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC26.56■■□□□ 1.84
Limch1Q3UH68 Gm42699-201ENSMUST00000198104 1657 ntBASIC26.56■■□□□ 1.84
Limch1Q3UH68 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Limch1Q3UH68 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC26.55■■□□□ 1.84
Limch1Q3UH68 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Limch1Q3UH68 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC26.55■■□□□ 1.84
Limch1Q3UH68 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Limch1Q3UH68 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Limch1Q3UH68 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Limch1Q3UH68 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Limch1Q3UH68 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Limch1Q3UH68 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Limch1Q3UH68 Scarna2-201ENSMUST00000157560 414 ntBASIC26.52■■□□□ 1.84
Limch1Q3UH68 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Limch1Q3UH68 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Limch1Q3UH68 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
Limch1Q3UH68 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Limch1Q3UH68 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.83
Limch1Q3UH68 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Limch1Q3UH68 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC26.51■■□□□ 1.83
Limch1Q3UH68 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Limch1Q3UH68 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Limch1Q3UH68 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Limch1Q3UH68 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
Limch1Q3UH68 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Limch1Q3UH68 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Limch1Q3UH68 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Limch1Q3UH68 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC26.49■■□□□ 1.83
Limch1Q3UH68 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
Limch1Q3UH68 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Limch1Q3UH68 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Limch1Q3UH68 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
Limch1Q3UH68 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Limch1Q3UH68 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Limch1Q3UH68 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Limch1Q3UH68 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC26.48■■□□□ 1.83
Limch1Q3UH68 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Limch1Q3UH68 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
Limch1Q3UH68 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Limch1Q3UH68 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Limch1Q3UH68 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Limch1Q3UH68 Gm9806-201ENSMUST00000051080 552 ntBASIC26.46■■□□□ 1.83
Limch1Q3UH68 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Limch1Q3UH68 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Limch1Q3UH68 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Retrieved 100 of 76,532 protein–RNA pairs in 87.5 ms