Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx3P48381 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
Rfx3P48381 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Rfx3P48381 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Rfx3P48381 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rfx3P48381 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Rfx3P48381 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rfx3P48381 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx3P48381 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Rfx3P48381 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx3P48381 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rfx3P48381 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx3P48381 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx3P48381 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx3P48381 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx3P48381 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx3P48381 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx3P48381 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rfx3P48381 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Rfx3P48381 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx3P48381 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx3P48381 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx3P48381 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx3P48381 Gm8503-201ENSMUST00000118131 455 ntBASIC20.35■□□□□ 0.85
Rfx3P48381 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rfx3P48381 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx3P48381 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx3P48381 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx3P48381 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx3P48381 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Rfx3P48381 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
Rfx3P48381 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.34■□□□□ 0.85
Rfx3P48381 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Rfx3P48381 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rfx3P48381 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC20.33■□□□□ 0.85
Rfx3P48381 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rfx3P48381 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Rfx3P48381 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx3P48381 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx3P48381 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Rfx3P48381 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
Rfx3P48381 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx3P48381 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Rfx3P48381 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC20.31■□□□□ 0.84
Rfx3P48381 Gm14121-201ENSMUST00000121441 1380 ntBASIC20.31■□□□□ 0.84
Rfx3P48381 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Rfx3P48381 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Rfx3P48381 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx3P48381 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx3P48381 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx3P48381 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rfx3P48381 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Rfx3P48381 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.29■□□□□ 0.84
Rfx3P48381 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx3P48381 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Rfx3P48381 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx3P48381 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx3P48381 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Rfx3P48381 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx3P48381 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx3P48381 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rfx3P48381 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx3P48381 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx3P48381 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx3P48381 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx3P48381 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Rfx3P48381 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rfx3P48381 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx3P48381 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx3P48381 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx3P48381 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx3P48381 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
Rfx3P48381 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx3P48381 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx3P48381 Gm37136-201ENSMUST00000194368 194 ntBASIC20.27■□□□□ 0.84
Rfx3P48381 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC20.27■□□□□ 0.84
Rfx3P48381 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rfx3P48381 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx3P48381 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC20.26■□□□□ 0.83
Rfx3P48381 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rfx3P48381 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
Rfx3P48381 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.25■□□□□ 0.83
Rfx3P48381 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx3P48381 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC20.25■□□□□ 0.83
Rfx3P48381 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx3P48381 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx3P48381 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx3P48381 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx3P48381 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx3P48381 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx3P48381 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Rfx3P48381 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx3P48381 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx3P48381 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx3P48381 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Rfx3P48381 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC20.23■□□□□ 0.83
Rfx3P48381 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx3P48381 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx3P48381 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx3P48381 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms