Protein–RNA interactions for Protein: P10855

Ccl3, C-C motif chemokine 3, mousemouse

Predictions only

Length 92 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccl3P10855 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC20.51■□□□□ 0.87
Ccl3P10855 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.5■□□□□ 0.87
Ccl3P10855 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ccl3P10855 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Ccl3P10855 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ccl3P10855 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccl3P10855 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
Ccl3P10855 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ccl3P10855 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccl3P10855 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ccl3P10855 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Ccl3P10855 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Ccl3P10855 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ccl3P10855 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ccl3P10855 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
Ccl3P10855 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ccl3P10855 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ccl3P10855 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Ccl3P10855 Gm15546-201ENSMUST00000122095 826 ntBASIC20.44■□□□□ 0.86
Ccl3P10855 Gm22567-201ENSMUST00000175542 342 ntBASIC20.44■□□□□ 0.86
Ccl3P10855 Amer2-203ENSMUST00000225247 2662 ntBASIC20.44■□□□□ 0.86
Ccl3P10855 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ccl3P10855 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Ccl3P10855 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ccl3P10855 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC20.43■□□□□ 0.86
Ccl3P10855 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
Ccl3P10855 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ccl3P10855 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
Ccl3P10855 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Ccl3P10855 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC20.41■□□□□ 0.86
Ccl3P10855 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Ccl3P10855 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Ccl3P10855 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ccl3P10855 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.41■□□□□ 0.86
Ccl3P10855 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
Ccl3P10855 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC20.4■□□□□ 0.86
Ccl3P10855 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC20.4■□□□□ 0.86
Ccl3P10855 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.4■□□□□ 0.86
Ccl3P10855 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ccl3P10855 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
Ccl3P10855 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Ccl3P10855 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ccl3P10855 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Ccl3P10855 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Ccl3P10855 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ccl3P10855 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Ccl3P10855 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ccl3P10855 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC20.38■□□□□ 0.85
Ccl3P10855 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ccl3P10855 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Ccl3P10855 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ccl3P10855 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ccl3P10855 Gm5522-201ENSMUST00000189483 1242 ntBASIC20.37■□□□□ 0.85
Ccl3P10855 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ccl3P10855 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ccl3P10855 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Ccl3P10855 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Ccl3P10855 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.36■□□□□ 0.85
Ccl3P10855 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Ccl3P10855 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ccl3P10855 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Ccl3P10855 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ccl3P10855 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ccl3P10855 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ccl3P10855 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Ccl3P10855 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ccl3P10855 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Ccl3P10855 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
Ccl3P10855 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Ccl3P10855 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Ccl3P10855 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.32■□□□□ 0.84
Ccl3P10855 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ccl3P10855 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Ccl3P10855 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.3■□□□□ 0.84
Ccl3P10855 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Ccl3P10855 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Ccl3P10855 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC20.3■□□□□ 0.84
Ccl3P10855 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC20.3■□□□□ 0.84
Ccl3P10855 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC20.3■□□□□ 0.84
Ccl3P10855 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccl3P10855 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ccl3P10855 Nsd1-203ENSMUST00000224156 1149 ntBASIC20.29■□□□□ 0.84
Ccl3P10855 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ccl3P10855 Gm13238-201ENSMUST00000117655 780 ntBASIC20.28■□□□□ 0.84
Ccl3P10855 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ccl3P10855 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ccl3P10855 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC20.27■□□□□ 0.84
Ccl3P10855 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Ccl3P10855 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC20.27■□□□□ 0.84
Ccl3P10855 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.27■□□□□ 0.84
Ccl3P10855 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccl3P10855 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.27■□□□□ 0.83
Ccl3P10855 Gm43566-201ENSMUST00000196851 808 ntBASIC20.26■□□□□ 0.83
Ccl3P10855 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ccl3P10855 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC20.26■□□□□ 0.83
Ccl3P10855 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC20.26■□□□□ 0.83
Ccl3P10855 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.25■□□□□ 0.83
Ccl3P10855 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Ccl3P10855 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccl3P10855 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 10.7 ms