Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Lmx1bO88609 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC20.56■□□□□ 0.88
Lmx1bO88609 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Lmx1bO88609 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
Lmx1bO88609 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Lmx1bO88609 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Lmx1bO88609 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Lmx1bO88609 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Lmx1bO88609 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Lmx1bO88609 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lmx1bO88609 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC20.53■□□□□ 0.88
Lmx1bO88609 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Lmx1bO88609 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lmx1bO88609 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lmx1bO88609 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Lmx1bO88609 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lmx1bO88609 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Lmx1bO88609 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lmx1bO88609 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Lmx1bO88609 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lmx1bO88609 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lmx1bO88609 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lmx1bO88609 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Lmx1bO88609 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Lmx1bO88609 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lmx1bO88609 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lmx1bO88609 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Lmx1bO88609 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
Lmx1bO88609 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lmx1bO88609 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lmx1bO88609 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Lmx1bO88609 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lmx1bO88609 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lmx1bO88609 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Lmx1bO88609 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lmx1bO88609 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lmx1bO88609 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Lmx1bO88609 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.49■□□□□ 0.87
Lmx1bO88609 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lmx1bO88609 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lmx1bO88609 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lmx1bO88609 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.48■□□□□ 0.87
Lmx1bO88609 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.48■□□□□ 0.87
Lmx1bO88609 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Lmx1bO88609 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lmx1bO88609 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Lmx1bO88609 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Lmx1bO88609 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Lmx1bO88609 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Lmx1bO88609 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Lmx1bO88609 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Lmx1bO88609 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lmx1bO88609 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lmx1bO88609 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Lmx1bO88609 Gm7332-201ENSMUST00000118351 454 ntBASIC20.46■□□□□ 0.87
Lmx1bO88609 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lmx1bO88609 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Lmx1bO88609 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lmx1bO88609 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Lmx1bO88609 Terc-201ENSMUST00000082862 423 ntBASIC20.45■□□□□ 0.86
Lmx1bO88609 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Lmx1bO88609 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Lmx1bO88609 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC20.44■□□□□ 0.86
Lmx1bO88609 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC20.44■□□□□ 0.86
Lmx1bO88609 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Lmx1bO88609 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Lmx1bO88609 AC153911.1-201ENSMUST00000220378 758 ntBASIC20.44■□□□□ 0.86
Lmx1bO88609 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Lmx1bO88609 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Lmx1bO88609 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
Lmx1bO88609 Gm14523-201ENSMUST00000117260 558 ntBASIC20.43■□□□□ 0.86
Lmx1bO88609 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.43■□□□□ 0.86
Lmx1bO88609 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Lmx1bO88609 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Lmx1bO88609 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Lmx1bO88609 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Lmx1bO88609 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Lmx1bO88609 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.42■□□□□ 0.86
Lmx1bO88609 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Lmx1bO88609 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Lmx1bO88609 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Lmx1bO88609 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Lmx1bO88609 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Lmx1bO88609 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.41■□□□□ 0.86
Lmx1bO88609 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Lmx1bO88609 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Lmx1bO88609 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Lmx1bO88609 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC20.4■□□□□ 0.86
Lmx1bO88609 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Lmx1bO88609 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Lmx1bO88609 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC20.4■□□□□ 0.86
Lmx1bO88609 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Lmx1bO88609 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Lmx1bO88609 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Lmx1bO88609 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Lmx1bO88609 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.39■□□□□ 0.85
Lmx1bO88609 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Lmx1bO88609 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Lmx1bO88609 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Lmx1bO88609 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 14.4 ms