Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Hmgb3O54879 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.61
Hmgb3O54879 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Hmgb3O54879 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC18.83■□□□□ 0.6
Hmgb3O54879 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb3O54879 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb3O54879 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb3O54879 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb3O54879 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb3O54879 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb3O54879 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb3O54879 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb3O54879 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb3O54879 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb3O54879 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb3O54879 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb3O54879 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb3O54879 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb3O54879 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb3O54879 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb3O54879 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb3O54879 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb3O54879 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hmgb3O54879 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hmgb3O54879 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hmgb3O54879 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Hmgb3O54879 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Hmgb3O54879 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hmgb3O54879 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hmgb3O54879 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
Hmgb3O54879 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.79■□□□□ 0.6
Hmgb3O54879 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
Hmgb3O54879 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hmgb3O54879 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Hmgb3O54879 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hmgb3O54879 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Hmgb3O54879 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Hmgb3O54879 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hmgb3O54879 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hmgb3O54879 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC18.77■□□□□ 0.6
Hmgb3O54879 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hmgb3O54879 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hmgb3O54879 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Hmgb3O54879 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Hmgb3O54879 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
Hmgb3O54879 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Hmgb3O54879 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Hmgb3O54879 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hmgb3O54879 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Hmgb3O54879 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Hmgb3O54879 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Hmgb3O54879 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hmgb3O54879 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hmgb3O54879 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hmgb3O54879 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Hmgb3O54879 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Hmgb3O54879 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Hmgb3O54879 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Hmgb3O54879 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Hmgb3O54879 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Hmgb3O54879 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Hmgb3O54879 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Hmgb3O54879 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Hmgb3O54879 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Hmgb3O54879 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Hmgb3O54879 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Hmgb3O54879 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.73■□□□□ 0.59
Hmgb3O54879 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Hmgb3O54879 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Hmgb3O54879 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC18.72■□□□□ 0.59
Hmgb3O54879 Gm16148-201ENSMUST00000119653 893 ntBASIC18.72■□□□□ 0.59
Hmgb3O54879 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Hmgb3O54879 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Hmgb3O54879 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Hmgb3O54879 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Hmgb3O54879 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Hmgb3O54879 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Hmgb3O54879 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Hmgb3O54879 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Hmgb3O54879 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Hmgb3O54879 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Hmgb3O54879 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Hmgb3O54879 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Hmgb3O54879 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Hmgb3O54879 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Hmgb3O54879 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb3O54879 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC18.69■□□□□ 0.58
Hmgb3O54879 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb3O54879 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Hmgb3O54879 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb3O54879 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb3O54879 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb3O54879 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb3O54879 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb3O54879 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb3O54879 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC18.68■□□□□ 0.58
Hmgb3O54879 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb3O54879 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb3O54879 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb3O54879 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms