Protein–RNA interactions for Protein: D3Z4R1

Hfm1, Probable ATP-dependent DNA helicase HFM1, mousemouse

Predictions only

Length 1,434 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hfm1D3Z4R1 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
Hfm1D3Z4R1 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC33.21■■■□□ 2.91
Hfm1D3Z4R1 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC33.2■■■□□ 2.91
Hfm1D3Z4R1 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
Hfm1D3Z4R1 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC33.2■■■□□ 2.91
Hfm1D3Z4R1 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC33.2■■■□□ 2.91
Hfm1D3Z4R1 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.9
Hfm1D3Z4R1 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC33.19■■■□□ 2.9
Hfm1D3Z4R1 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC33.19■■■□□ 2.9
Hfm1D3Z4R1 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
Hfm1D3Z4R1 Zxda-201ENSMUST00000117281 2621 ntBASIC33.18■■■□□ 2.9
Hfm1D3Z4R1 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC33.17■■■□□ 2.9
Hfm1D3Z4R1 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC33.15■■■□□ 2.9
Hfm1D3Z4R1 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
Hfm1D3Z4R1 Gm37847-201ENSMUST00000192163 1497 ntBASIC33.13■■■□□ 2.89
Hfm1D3Z4R1 Gm31748-201ENSMUST00000194938 1497 ntBASIC33.13■■■□□ 2.89
Hfm1D3Z4R1 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC33.13■■■□□ 2.89
Hfm1D3Z4R1 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
Hfm1D3Z4R1 Gm43592-201ENSMUST00000196922 1165 ntBASIC33.13■■■□□ 2.89
Hfm1D3Z4R1 Rps24-207ENSMUST00000224568 714 ntBASIC33.13■■■□□ 2.89
Hfm1D3Z4R1 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC33.13■■■□□ 2.89
Hfm1D3Z4R1 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC33.12■■■□□ 2.89
Hfm1D3Z4R1 AC153504.1-201ENSMUST00000218379 2290 ntBASIC33.12■■■□□ 2.89
Hfm1D3Z4R1 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
Hfm1D3Z4R1 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC33.11■■■□□ 2.89
Hfm1D3Z4R1 Gm45444-201ENSMUST00000211394 898 ntBASIC33.11■■■□□ 2.89
Hfm1D3Z4R1 Gm15820-201ENSMUST00000201566 728 ntBASIC33.1■■■□□ 2.89
Hfm1D3Z4R1 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC33.09■■■□□ 2.89
Hfm1D3Z4R1 Nsd1-203ENSMUST00000224156 1149 ntBASIC33.09■■■□□ 2.89
Hfm1D3Z4R1 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
Hfm1D3Z4R1 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
Hfm1D3Z4R1 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC33.08■■■□□ 2.89
Hfm1D3Z4R1 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
Hfm1D3Z4R1 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
Hfm1D3Z4R1 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
Hfm1D3Z4R1 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
Hfm1D3Z4R1 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
Hfm1D3Z4R1 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC33.04■■■□□ 2.88
Hfm1D3Z4R1 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
Hfm1D3Z4R1 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC33.03■■■□□ 2.88
Hfm1D3Z4R1 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
Hfm1D3Z4R1 Gm45102-201ENSMUST00000207427 857 ntBASIC33.02■■■□□ 2.88
Hfm1D3Z4R1 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC33.02■■■□□ 2.88
Hfm1D3Z4R1 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC33.02■■■□□ 2.88
Hfm1D3Z4R1 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
Hfm1D3Z4R1 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC33.02■■■□□ 2.88
Hfm1D3Z4R1 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
Hfm1D3Z4R1 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC33■■■□□ 2.87
Hfm1D3Z4R1 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
Hfm1D3Z4R1 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
Hfm1D3Z4R1 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
Hfm1D3Z4R1 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
Hfm1D3Z4R1 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
Hfm1D3Z4R1 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
Hfm1D3Z4R1 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
Hfm1D3Z4R1 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC32.97■■■□□ 2.87
Hfm1D3Z4R1 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC32.97■■■□□ 2.87
Hfm1D3Z4R1 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
Hfm1D3Z4R1 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC32.97■■■□□ 2.87
Hfm1D3Z4R1 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
Hfm1D3Z4R1 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC32.96■■■□□ 2.87
Hfm1D3Z4R1 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
Hfm1D3Z4R1 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
Hfm1D3Z4R1 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
Hfm1D3Z4R1 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC32.95■■■□□ 2.87
Hfm1D3Z4R1 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC32.94■■■□□ 2.86
Hfm1D3Z4R1 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC32.94■■■□□ 2.86
Hfm1D3Z4R1 Gm14117-201ENSMUST00000122417 843 ntBASIC32.93■■■□□ 2.86
Hfm1D3Z4R1 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
Hfm1D3Z4R1 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC32.93■■■□□ 2.86
Hfm1D3Z4R1 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC32.92■■■□□ 2.86
Hfm1D3Z4R1 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
Hfm1D3Z4R1 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC32.92■■■□□ 2.86
Hfm1D3Z4R1 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
Hfm1D3Z4R1 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC32.92■■■□□ 2.86
Hfm1D3Z4R1 Gm43445-201ENSMUST00000198564 2091 ntBASIC32.91■■■□□ 2.86
Hfm1D3Z4R1 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
Hfm1D3Z4R1 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
Hfm1D3Z4R1 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
Hfm1D3Z4R1 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
Hfm1D3Z4R1 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC32.9■■■□□ 2.86
Hfm1D3Z4R1 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
Hfm1D3Z4R1 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
Hfm1D3Z4R1 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC32.86■■■□□ 2.85
Hfm1D3Z4R1 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
Hfm1D3Z4R1 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC32.85■■■□□ 2.85
Hfm1D3Z4R1 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC32.85■■■□□ 2.85
Hfm1D3Z4R1 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC32.85■■■□□ 2.85
Hfm1D3Z4R1 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
Hfm1D3Z4R1 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
Hfm1D3Z4R1 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
Hfm1D3Z4R1 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC32.85■■■□□ 2.85
Hfm1D3Z4R1 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC32.85■■■□□ 2.85
Hfm1D3Z4R1 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC32.85■■■□□ 2.85
Hfm1D3Z4R1 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC32.84■■■□□ 2.85
Hfm1D3Z4R1 Gm4419-202ENSMUST00000226239 1431 ntBASIC32.83■■■□□ 2.85
Hfm1D3Z4R1 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
Hfm1D3Z4R1 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Hfm1D3Z4R1 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Hfm1D3Z4R1 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
Retrieved 100 of 76,532 protein–RNA pairs in 14.6 ms