Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Pcdhgb8A0A140LI48 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Pcdhgb8A0A140LI48 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC20.34■□□□□ 0.85
Pcdhgb8A0A140LI48 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Pcdhgb8A0A140LI48 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC20.34■□□□□ 0.85
Pcdhgb8A0A140LI48 Gm11599-201ENSMUST00000118720 878 ntBASIC20.34■□□□□ 0.85
Pcdhgb8A0A140LI48 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Pcdhgb8A0A140LI48 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Pcdhgb8A0A140LI48 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Pcdhgb8A0A140LI48 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Pcdhgb8A0A140LI48 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Pcdhgb8A0A140LI48 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Pcdhgb8A0A140LI48 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC20.32■□□□□ 0.84
Pcdhgb8A0A140LI48 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Pcdhgb8A0A140LI48 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Pcdhgb8A0A140LI48 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
Pcdhgb8A0A140LI48 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Pcdhgb8A0A140LI48 Pcf11-205ENSMUST00000208255 1720 ntBASIC20.32■□□□□ 0.84
Pcdhgb8A0A140LI48 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdhgb8A0A140LI48 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdhgb8A0A140LI48 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdhgb8A0A140LI48 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdhgb8A0A140LI48 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Pcdhgb8A0A140LI48 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Pcdhgb8A0A140LI48 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Pcdhgb8A0A140LI48 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdhgb8A0A140LI48 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdhgb8A0A140LI48 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC20.29■□□□□ 0.84
Pcdhgb8A0A140LI48 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Pcdhgb8A0A140LI48 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdhgb8A0A140LI48 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Pcdhgb8A0A140LI48 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdhgb8A0A140LI48 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdhgb8A0A140LI48 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Pcdhgb8A0A140LI48 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdhgb8A0A140LI48 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC20.28■□□□□ 0.84
Pcdhgb8A0A140LI48 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdhgb8A0A140LI48 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdhgb8A0A140LI48 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Pcdhgb8A0A140LI48 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
Pcdhgb8A0A140LI48 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdhgb8A0A140LI48 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.27■□□□□ 0.84
Pcdhgb8A0A140LI48 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdhgb8A0A140LI48 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdhgb8A0A140LI48 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdhgb8A0A140LI48 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdhgb8A0A140LI48 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC20.27■□□□□ 0.83
Pcdhgb8A0A140LI48 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Pcdhgb8A0A140LI48 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC20.26■□□□□ 0.83
Pcdhgb8A0A140LI48 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Pcdhgb8A0A140LI48 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Pcdhgb8A0A140LI48 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Pcdhgb8A0A140LI48 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.25■□□□□ 0.83
Pcdhgb8A0A140LI48 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdhgb8A0A140LI48 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdhgb8A0A140LI48 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdhgb8A0A140LI48 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Pcdhgb8A0A140LI48 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Pcdhgb8A0A140LI48 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Pcdhgb8A0A140LI48 Gm30023-201ENSMUST00000197970 889 ntBASIC20.24■□□□□ 0.83
Pcdhgb8A0A140LI48 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Pcdhgb8A0A140LI48 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC20.24■□□□□ 0.83
Pcdhgb8A0A140LI48 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Pcdhgb8A0A140LI48 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdhgb8A0A140LI48 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdhgb8A0A140LI48 AC131739.1-201ENSMUST00000221692 1245 ntBASIC20.23■□□□□ 0.83
Pcdhgb8A0A140LI48 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdhgb8A0A140LI48 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdhgb8A0A140LI48 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdhgb8A0A140LI48 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Pcdhgb8A0A140LI48 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Pcdhgb8A0A140LI48 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdhgb8A0A140LI48 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Pcdhgb8A0A140LI48 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdhgb8A0A140LI48 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdhgb8A0A140LI48 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdhgb8A0A140LI48 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdhgb8A0A140LI48 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdhgb8A0A140LI48 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Pcdhgb8A0A140LI48 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdhgb8A0A140LI48 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.18■□□□□ 0.82
Pcdhgb8A0A140LI48 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Pcdhgb8A0A140LI48 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdhgb8A0A140LI48 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.17■□□□□ 0.82
Pcdhgb8A0A140LI48 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC20.17■□□□□ 0.82
Pcdhgb8A0A140LI48 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdhgb8A0A140LI48 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdhgb8A0A140LI48 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdhgb8A0A140LI48 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Pcdhgb8A0A140LI48 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdhgb8A0A140LI48 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Pcdhgb8A0A140LI48 Particl-201ENSMUST00000205370 1560 ntBASIC20.16■□□□□ 0.82
Pcdhgb8A0A140LI48 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdhgb8A0A140LI48 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.15■□□□□ 0.82
Pcdhgb8A0A140LI48 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Pcdhgb8A0A140LI48 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdhgb8A0A140LI48 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC20.14■□□□□ 0.82
Pcdhgb8A0A140LI48 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdhgb8A0A140LI48 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdhgb8A0A140LI48 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 127.7 ms