Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A1P20908 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.69■□□□□ 0.42
COL5A1P20908 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.69■□□□□ 0.42
COL5A1P20908 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A1P20908 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A1P20908 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A1P20908 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.69■□□□□ 0.42
COL5A1P20908 AL032819.2-201ENST00000624543 2162 ntBASIC17.69■□□□□ 0.42
COL5A1P20908 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.69■□□□□ 0.42
COL5A1P20908 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
COL5A1P20908 AC005332.7-201ENST00000614046 2005 ntBASIC17.69■□□□□ 0.42
COL5A1P20908 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.69■□□□□ 0.42
COL5A1P20908 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A1P20908 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A1P20908 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A1P20908 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.69■□□□□ 0.42
COL5A1P20908 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.69■□□□□ 0.42
COL5A1P20908 AC092865.5-201ENST00000545435 363 ntBASIC17.69■□□□□ 0.42
COL5A1P20908 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.69■□□□□ 0.42
COL5A1P20908 AL138831.2-201ENST00000606564 490 ntBASIC17.69■□□□□ 0.42
COL5A1P20908 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A1P20908 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A1P20908 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.69■□□□□ 0.42
COL5A1P20908 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A1P20908 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.69■□□□□ 0.42
COL5A1P20908 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.69■□□□□ 0.42
COL5A1P20908 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A1P20908 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A1P20908 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A1P20908 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL5A1P20908 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.68■□□□□ 0.42
COL5A1P20908 MIR1233-2-201ENST00000408138 82 ntBASIC17.68■□□□□ 0.42
COL5A1P20908 MIR1233-1-201ENST00000408722 82 ntBASIC17.68■□□□□ 0.42
COL5A1P20908 AC093909.1-201ENST00000504731 1122 ntBASIC17.68■□□□□ 0.42
COL5A1P20908 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.68■□□□□ 0.42
COL5A1P20908 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 AC116562.4-201ENST00000641316 2276 ntBASIC17.68■□□□□ 0.42
COL5A1P20908 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.68■□□□□ 0.42
COL5A1P20908 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.68■□□□□ 0.42
COL5A1P20908 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
COL5A1P20908 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A1P20908 POLD2P1-201ENST00000511220 997 ntBASIC17.68■□□□□ 0.42
COL5A1P20908 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A1P20908 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.67■□□□□ 0.42
COL5A1P20908 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.67■□□□□ 0.42
COL5A1P20908 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A1P20908 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A1P20908 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A1P20908 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A1P20908 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.67■□□□□ 0.42
COL5A1P20908 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.67■□□□□ 0.42
COL5A1P20908 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A1P20908 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.67■□□□□ 0.42
COL5A1P20908 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A1P20908 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.67■□□□□ 0.42
COL5A1P20908 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A1P20908 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A1P20908 MIR149-201ENST00000384879 89 ntBASIC17.67■□□□□ 0.42
COL5A1P20908 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
COL5A1P20908 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.67■□□□□ 0.42
COL5A1P20908 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.67■□□□□ 0.42
COL5A1P20908 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.67■□□□□ 0.42
COL5A1P20908 PGAM5P1-201ENST00000518923 814 ntBASIC17.67■□□□□ 0.42
COL5A1P20908 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.67■□□□□ 0.42
COL5A1P20908 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
COL5A1P20908 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A1P20908 TERC-201ENST00000602385 541 ntBASIC17.67■□□□□ 0.42
COL5A1P20908 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.67■□□□□ 0.42
COL5A1P20908 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.67■□□□□ 0.42
COL5A1P20908 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A1P20908 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.67■□□□□ 0.42
COL5A1P20908 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A1P20908 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A1P20908 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.66■□□□□ 0.42
COL5A1P20908 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A1P20908 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.66■□□□□ 0.42
COL5A1P20908 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.66■□□□□ 0.42
COL5A1P20908 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A1P20908 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A1P20908 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.66■□□□□ 0.42
COL5A1P20908 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A1P20908 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.66■□□□□ 0.42
COL5A1P20908 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms