Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC12.84□□□□□ -0.35
Sdc1P18828 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Sdc1P18828 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC12.84□□□□□ -0.35
Sdc1P18828 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC12.84□□□□□ -0.35
Sdc1P18828 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC12.84□□□□□ -0.35
Sdc1P18828 Gm18671-201ENSMUST00000214826 683 ntBASIC12.84□□□□□ -0.35
Sdc1P18828 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
Sdc1P18828 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC12.84□□□□□ -0.35
Sdc1P18828 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Sdc1P18828 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Sdc1P18828 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sdc1P18828 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Sdc1P18828 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
Sdc1P18828 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
Sdc1P18828 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Gm42555-201ENSMUST00000199304 1039 ntBASIC12.83□□□□□ -0.36
Sdc1P18828 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Sdc1P18828 AC163280.1-201ENSMUST00000228194 1100 ntBASIC12.83□□□□□ -0.36
Sdc1P18828 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Sdc1P18828 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Sdc1P18828 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Sdc1P18828 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC12.83□□□□□ -0.36
Sdc1P18828 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Sdc1P18828 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC12.83□□□□□ -0.36
Sdc1P18828 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sdc1P18828 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Sdc1P18828 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Sdc1P18828 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Sdc1P18828 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Sdc1P18828 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Sdc1P18828 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC12.82□□□□□ -0.36
Sdc1P18828 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Sdc1P18828 Gm37292-201ENSMUST00000192062 758 ntBASIC12.82□□□□□ -0.36
Sdc1P18828 Gm2559-201ENSMUST00000201323 363 ntBASIC12.82□□□□□ -0.36
Sdc1P18828 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC12.82□□□□□ -0.36
Sdc1P18828 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC12.82□□□□□ -0.36
Sdc1P18828 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC12.82□□□□□ -0.36
Sdc1P18828 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Gm21451-201ENSMUST00000111062 2775 ntBASIC12.82□□□□□ -0.36
Sdc1P18828 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
Sdc1P18828 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sdc1P18828 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms