Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 PIN1-206ENST00000587625 878 ntTSL 2 BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 PRKN-208ENST00000610470 531 ntTSL 2 BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 PRKN-209ENST00000612485 225 ntTSL 5 BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
CCDC88BA6NC98 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC31.96■■■□□ 2.71
CCDC88BA6NC98 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC31.96■■■□□ 2.71
CCDC88BA6NC98 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
CCDC88BA6NC98 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
CCDC88BA6NC98 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC31.96■■■□□ 2.71
CCDC88BA6NC98 AC073648.2-201ENST00000510116 352 ntBASIC31.96■■■□□ 2.71
CCDC88BA6NC98 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
CCDC88BA6NC98 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC31.95■■■□□ 2.71
CCDC88BA6NC98 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC31.95■■■□□ 2.71
CCDC88BA6NC98 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC31.95■■■□□ 2.71
CCDC88BA6NC98 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
CCDC88BA6NC98 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
CCDC88BA6NC98 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC31.95■■■□□ 2.71
CCDC88BA6NC98 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
CCDC88BA6NC98 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.71
CCDC88BA6NC98 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC31.95■■■□□ 2.71
CCDC88BA6NC98 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC31.95■■■□□ 2.71
CCDC88BA6NC98 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC31.95■■■□□ 2.7
CCDC88BA6NC98 HIST2H3DP1-201ENST00000401004 416 ntBASIC31.95■■■□□ 2.7
CCDC88BA6NC98 AC011467.2-201ENST00000598425 242 ntBASIC31.95■■■□□ 2.7
CCDC88BA6NC98 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC31.95■■■□□ 2.7
CCDC88BA6NC98 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC31.95■■■□□ 2.7
CCDC88BA6NC98 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CCDC88BA6NC98 CSF3-203ENST00000394148 622 ntTSL 3 BASIC31.94■■■□□ 2.7
CCDC88BA6NC98 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC31.94■■■□□ 2.7
CCDC88BA6NC98 RPL13AP23-201ENST00000480739 586 ntBASIC31.94■■■□□ 2.7
CCDC88BA6NC98 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
CCDC88BA6NC98 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC31.94■■■□□ 2.7
CCDC88BA6NC98 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC31.94■■■□□ 2.7
CCDC88BA6NC98 MTDHP3-201ENST00000594186 672 ntBASIC31.94■■■□□ 2.7
CCDC88BA6NC98 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC31.94■■■□□ 2.7
CCDC88BA6NC98 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC31.94■■■□□ 2.7
CCDC88BA6NC98 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC31.94■■■□□ 2.7
CCDC88BA6NC98 SNAI3-AS1-205ENST00000568633 2096 ntBASIC31.94■■■□□ 2.7
CCDC88BA6NC98 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
CCDC88BA6NC98 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC31.94■■■□□ 2.7
CCDC88BA6NC98 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC31.94■■■□□ 2.7
CCDC88BA6NC98 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
CCDC88BA6NC98 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC31.94■■■□□ 2.7
CCDC88BA6NC98 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 COX10-202ENST00000429152 875 ntTSL 2 BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 SART3-203ENST00000546611 1184 ntBASIC31.93■■■□□ 2.7
CCDC88BA6NC98 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 AC116407.3-201ENST00000623905 1129 ntBASIC31.93■■■□□ 2.7
CCDC88BA6NC98 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 AL161938.1-201ENST00000569833 2180 ntBASIC31.93■■■□□ 2.7
CCDC88BA6NC98 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
CCDC88BA6NC98 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC31.92■■■□□ 2.7
CCDC88BA6NC98 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC31.92■■■□□ 2.7
CCDC88BA6NC98 FABP5-202ENST00000396359 986 ntTSL 5 BASIC31.92■■■□□ 2.7
CCDC88BA6NC98 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC31.92■■■□□ 2.7
CCDC88BA6NC98 RBSN-204ENST00000449050 903 ntTSL 2 BASIC31.92■■■□□ 2.7
CCDC88BA6NC98 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC31.92■■■□□ 2.7
CCDC88BA6NC98 ASL-204ENST00000395331 1538 ntTSL 5 BASIC31.92■■■□□ 2.7
CCDC88BA6NC98 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC31.92■■■□□ 2.7
CCDC88BA6NC98 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
CCDC88BA6NC98 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
CCDC88BA6NC98 AC125634.1-201ENST00000438758 1403 ntBASIC31.92■■■□□ 2.7
CCDC88BA6NC98 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC31.92■■■□□ 2.7
CCDC88BA6NC98 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 AC093484.2-201ENST00000580996 2166 ntBASIC31.91■■■□□ 2.7
CCDC88BA6NC98 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 AL049812.1-201ENST00000432563 2267 ntBASIC31.91■■■□□ 2.7
CCDC88BA6NC98 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 AC092865.5-201ENST00000545435 363 ntBASIC31.91■■■□□ 2.7
CCDC88BA6NC98 AC021087.4-201ENST00000563761 564 ntBASIC31.91■■■□□ 2.7
CCDC88BA6NC98 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC31.91■■■□□ 2.7
CCDC88BA6NC98 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC31.9■■■□□ 2.7
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms