Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gm44357-201ENSMUST00000195897 142 ntBASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gm19658-201ENSMUST00000196231 138 ntBASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gm44367-201ENSMUST00000196836 138 ntBASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gm44350-201ENSMUST00000197197 138 ntBASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gm44390-201ENSMUST00000197533 144 ntBASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gm44313-201ENSMUST00000198018 138 ntBASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gm44486-201ENSMUST00000198508 138 ntBASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gm44314-201ENSMUST00000199263 138 ntBASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gm44394-201ENSMUST00000199558 138 ntBASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gm44484-201ENSMUST00000199873 138 ntBASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gm44466-201ENSMUST00000200264 138 ntBASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gm44359-201ENSMUST00000200671 138 ntBASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3bQ3ULL6 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Gm4535-201ENSMUST00000182274 558 ntBASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Gm37584-201ENSMUST00000193595 1290 ntBASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Gm6296-201ENSMUST00000222599 943 ntBASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Gm10355-201ENSMUST00000097146 517 ntBASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Upf3bQ3ULL6 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
Upf3bQ3ULL6 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
Upf3bQ3ULL6 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Prob1-201ENSMUST00000097619 3021 ntBASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Gm8344-201ENSMUST00000119813 856 ntBASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Gm6376-201ENSMUST00000209407 580 ntBASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Rps4l-201ENSMUST00000071745 943 ntBASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 App-207ENSMUST00000227737 2827 ntBASIC16.7■□□□□ 0.26
Upf3bQ3ULL6 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms