Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdx1P18111 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdx1P18111 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdx1P18111 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdx1P18111 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Cdx1P18111 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdx1P18111 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdx1P18111 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdx1P18111 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdx1P18111 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC12.67□□□□□ -0.38
Cdx1P18111 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Cdx1P18111 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Cdx1P18111 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC12.67□□□□□ -0.38
Cdx1P18111 Gm43353-201ENSMUST00000199224 1295 ntBASIC12.67□□□□□ -0.38
Cdx1P18111 Gm4974-201ENSMUST00000209974 875 ntBASIC12.67□□□□□ -0.38
Cdx1P18111 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Cdx1P18111 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Cdx1P18111 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Cdx1P18111 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cdx1P18111 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Cdx1P18111 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Cdx1P18111 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Cdx1P18111 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Cdx1P18111 Gm10418-201ENSMUST00000100943 576 ntBASIC12.66□□□□□ -0.38
Cdx1P18111 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Cdx1P18111 AA414768-201ENSMUST00000121924 1257 ntBASIC12.66□□□□□ -0.38
Cdx1P18111 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
Cdx1P18111 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Cdx1P18111 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cdx1P18111 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
Cdx1P18111 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Cdx1P18111 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
Cdx1P18111 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Cdx1P18111 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Gm6728-201ENSMUST00000178117 1065 ntBASIC12.65□□□□□ -0.38
Cdx1P18111 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 AC134329.2-201ENSMUST00000217897 428 ntBASIC12.65□□□□□ -0.38
Cdx1P18111 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
Cdx1P18111 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Cdx1P18111 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC12.65□□□□□ -0.38
Cdx1P18111 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cdx1P18111 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Cdx1P18111 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Cdx1P18111 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Cdx1P18111 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Cdx1P18111 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC12.65□□□□□ -0.39
Cdx1P18111 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Cdx1P18111 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cdx1P18111 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Cdx1P18111 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Cdx1P18111 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Cdx1P18111 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms