Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Prom1O54990 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.18■□□□□ 0.34
Prom1O54990 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC17.18■□□□□ 0.34
Prom1O54990 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
Prom1O54990 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC17.18■□□□□ 0.34
Prom1O54990 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC17.18■□□□□ 0.34
Prom1O54990 Gm11025-201ENSMUST00000140773 466 ntBASIC17.18■□□□□ 0.34
Prom1O54990 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Gm27301-201ENSMUST00000184012 127 ntBASIC17.18■□□□□ 0.34
Prom1O54990 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC17.18■□□□□ 0.34
Prom1O54990 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC17.18■□□□□ 0.34
Prom1O54990 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC17.18■□□□□ 0.34
Prom1O54990 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Prom1O54990 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Prom1O54990 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Prom1O54990 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Prom1O54990 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Prom1O54990 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Prom1O54990 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Prom1O54990 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC17.17■□□□□ 0.34
Prom1O54990 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Prom1O54990 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC17.17■□□□□ 0.34
Prom1O54990 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Prom1O54990 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC17.17■□□□□ 0.34
Prom1O54990 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Prom1O54990 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Prom1O54990 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Prom1O54990 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Prom1O54990 Gm38327-201ENSMUST00000195852 1755 ntBASIC17.17■□□□□ 0.34
Prom1O54990 Prkcz2-201ENSMUST00000206136 1756 ntBASIC17.17■□□□□ 0.34
Prom1O54990 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC17.17■□□□□ 0.34
Prom1O54990 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Prom1O54990 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Prom1O54990 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Prom1O54990 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prom1O54990 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prom1O54990 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prom1O54990 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prom1O54990 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prom1O54990 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prom1O54990 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Prom1O54990 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prom1O54990 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Prom1O54990 Gm11453-201ENSMUST00000117318 1007 ntBASIC17.16■□□□□ 0.34
Prom1O54990 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Prom1O54990 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Prom1O54990 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC17.16■□□□□ 0.34
Prom1O54990 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC17.16■□□□□ 0.34
Prom1O54990 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC17.16■□□□□ 0.34
Prom1O54990 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Prom1O54990 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Prom1O54990 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prom1O54990 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Prom1O54990 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prom1O54990 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prom1O54990 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
Prom1O54990 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC17.15■□□□□ 0.34
Prom1O54990 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prom1O54990 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prom1O54990 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prom1O54990 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Prom1O54990 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prom1O54990 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prom1O54990 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
Prom1O54990 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Prom1O54990 Gm16198-201ENSMUST00000118766 670 ntBASIC17.15■□□□□ 0.34
Prom1O54990 Gm14057-201ENSMUST00000120631 482 ntBASIC17.15■□□□□ 0.34
Prom1O54990 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Prom1O54990 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Prom1O54990 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC17.15■□□□□ 0.34
Prom1O54990 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC17.15■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms