Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Scn1bP97952 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Scn1bP97952 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Scn1bP97952 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Scn1bP97952 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Scn1bP97952 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Scn1bP97952 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
Scn1bP97952 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC14.4□□□□□ -0.1
Scn1bP97952 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Scn1bP97952 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC14.4□□□□□ -0.1
Scn1bP97952 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Scn1bP97952 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
Scn1bP97952 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Scn1bP97952 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.11
Scn1bP97952 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
Scn1bP97952 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Scn1bP97952 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
Scn1bP97952 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Gm10653-202ENSMUST00000139570 835 ntBASIC14.39□□□□□ -0.11
Scn1bP97952 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC14.39□□□□□ -0.11
Scn1bP97952 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC14.39□□□□□ -0.11
Scn1bP97952 AC159205.3-201ENSMUST00000224614 874 ntBASIC14.39□□□□□ -0.11
Scn1bP97952 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC14.39□□□□□ -0.11
Scn1bP97952 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Scn1bP97952 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.39□□□□□ -0.11
Scn1bP97952 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Scn1bP97952 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC14.38□□□□□ -0.11
Scn1bP97952 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
Scn1bP97952 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Scn1bP97952 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Scn1bP97952 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
Scn1bP97952 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
Scn1bP97952 Gm24841-201ENSMUST00000158676 357 ntBASIC14.38□□□□□ -0.11
Scn1bP97952 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC14.38□□□□□ -0.11
Scn1bP97952 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Gm37025-201ENSMUST00000195159 829 ntBASIC14.38□□□□□ -0.11
Scn1bP97952 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC14.38□□□□□ -0.11
Scn1bP97952 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Scn1bP97952 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC14.38□□□□□ -0.11
Scn1bP97952 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC14.38□□□□□ -0.11
Scn1bP97952 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Scn1bP97952 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Scn1bP97952 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Scn1bP97952 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Scn1bP97952 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Scn1bP97952 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Scn1bP97952 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Scn1bP97952 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC14.37□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 64.9 ms