Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A2P08572 MIR149-201ENST00000384879 89 ntBASIC18.69■□□□□ 0.58
COL4A2P08572 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A2P08572 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A2P08572 AF186996.4-201ENST00000467186 377 ntBASIC18.69■□□□□ 0.58
COL4A2P08572 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A2P08572 IGHV3-22-201ENST00000520721 359 ntBASIC18.69■□□□□ 0.58
COL4A2P08572 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A2P08572 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.69■□□□□ 0.58
COL4A2P08572 AP001269.4-201ENST00000609611 512 ntBASIC18.69■□□□□ 0.58
COL4A2P08572 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
COL4A2P08572 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
COL4A2P08572 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A2P08572 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A2P08572 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A2P08572 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A2P08572 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A2P08572 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL4A2P08572 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
COL4A2P08572 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL4A2P08572 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.69■□□□□ 0.58
COL4A2P08572 RNPS1P1-201ENST00000507437 918 ntBASIC18.69■□□□□ 0.58
COL4A2P08572 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.69■□□□□ 0.58
COL4A2P08572 AC073648.2-201ENST00000510116 352 ntBASIC18.69■□□□□ 0.58
COL4A2P08572 POLD2P1-201ENST00000511220 997 ntBASIC18.69■□□□□ 0.58
COL4A2P08572 PGAM5P1-201ENST00000518923 814 ntBASIC18.69■□□□□ 0.58
COL4A2P08572 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.69■□□□□ 0.58
COL4A2P08572 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.69■□□□□ 0.58
COL4A2P08572 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A2P08572 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.69■□□□□ 0.58
COL4A2P08572 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A2P08572 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
COL4A2P08572 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A2P08572 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A2P08572 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A2P08572 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A2P08572 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A2P08572 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A2P08572 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A2P08572 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
COL4A2P08572 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A2P08572 AC073130.3-201ENST00000624389 2278 ntBASIC18.68■□□□□ 0.58
COL4A2P08572 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
COL4A2P08572 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A2P08572 HNRNPDP1-201ENST00000439535 754 ntBASIC18.68■□□□□ 0.58
COL4A2P08572 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.68■□□□□ 0.58
COL4A2P08572 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.68■□□□□ 0.58
COL4A2P08572 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.68■□□□□ 0.58
COL4A2P08572 AC064862.7-201ENST00000604520 867 ntBASIC18.68■□□□□ 0.58
COL4A2P08572 AL355877.3-201ENST00000622820 899 ntBASIC18.68■□□□□ 0.58
COL4A2P08572 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A2P08572 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A2P08572 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A2P08572 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A2P08572 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A2P08572 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A2P08572 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A2P08572 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A2P08572 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A2P08572 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A2P08572 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COL4A2P08572 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
COL4A2P08572 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A2P08572 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A2P08572 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.67■□□□□ 0.58
COL4A2P08572 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A2P08572 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.67■□□□□ 0.58
COL4A2P08572 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.67■□□□□ 0.58
COL4A2P08572 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
COL4A2P08572 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A2P08572 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
COL4A2P08572 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A2P08572 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A2P08572 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A2P08572 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
COL4A2P08572 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A2P08572 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A2P08572 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
COL4A2P08572 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A2P08572 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
COL4A2P08572 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A2P08572 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A2P08572 SCARNA2-201ENST00000458748 420 ntBASIC18.66■□□□□ 0.58
COL4A2P08572 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.66■□□□□ 0.58
COL4A2P08572 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A2P08572 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A2P08572 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A2P08572 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A2P08572 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A2P08572 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A2P08572 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
COL4A2P08572 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A2P08572 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A2P08572 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A2P08572 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A2P08572 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
COL4A2P08572 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A2P08572 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A2P08572 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
COL4A2P08572 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms