Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Gm13436-201ENSMUST00000120418 567 ntBASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdh1F7BJK1 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC14.16□□□□□ -0.14
Pcdh1F7BJK1 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Gm13559-201ENSMUST00000120476 863 ntBASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdh1F7BJK1 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Mir6404-201ENSMUST00000183699 94 ntBASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Gm44430-201ENSMUST00000203376 995 ntBASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Pcdh1F7BJK1 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Pcdh1F7BJK1 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Pcdh1F7BJK1 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Pcdh1F7BJK1 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Pcdh1F7BJK1 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC14.13□□□□□ -0.15
Pcdh1F7BJK1 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Pcdh1F7BJK1 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Pcdh1F7BJK1 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 53.9 ms