Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC12.24□□□□□ -0.45
Hoxd3P09027 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hoxd3P09027 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hoxd3P09027 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hoxd3P09027 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hoxd3P09027 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hoxd3P09027 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Hoxd3P09027 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Hoxd3P09027 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hoxd3P09027 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hoxd3P09027 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hoxd3P09027 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Hoxd3P09027 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Hoxd3P09027 Gm10293-201ENSMUST00000076317 1002 ntBASIC12.24□□□□□ -0.45
Hoxd3P09027 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hoxd3P09027 Gm6316-201ENSMUST00000082064 1020 ntBASIC12.24□□□□□ -0.45
Hoxd3P09027 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Hoxd3P09027 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hoxd3P09027 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC12.24□□□□□ -0.45
Hoxd3P09027 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hoxd3P09027 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
Hoxd3P09027 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Gm42918-201ENSMUST00000199249 1580 ntBASIC12.23□□□□□ -0.45
Hoxd3P09027 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Gm15173-201ENSMUST00000122049 433 ntBASIC12.23□□□□□ -0.45
Hoxd3P09027 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC12.23□□□□□ -0.45
Hoxd3P09027 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC12.23□□□□□ -0.45
Hoxd3P09027 Gm7230-201ENSMUST00000173026 815 ntBASIC12.23□□□□□ -0.45
Hoxd3P09027 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC12.23□□□□□ -0.45
Hoxd3P09027 Gm43514-201ENSMUST00000198852 424 ntBASIC12.23□□□□□ -0.45
Hoxd3P09027 Gm43416-201ENSMUST00000201916 1015 ntBASIC12.23□□□□□ -0.45
Hoxd3P09027 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC12.23□□□□□ -0.45
Hoxd3P09027 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC12.23□□□□□ -0.45
Hoxd3P09027 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Hoxd3P09027 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC12.23□□□□□ -0.45
Hoxd3P09027 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Hoxd3P09027 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hoxd3P09027 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Hoxd3P09027 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hoxd3P09027 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
Hoxd3P09027 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hoxd3P09027 Zkscan3-208ENSMUST00000224820 5398 ntBASIC12.21□□□□□ -0.45
Hoxd3P09027 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms