Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC24.64■■□□□ 1.54
COL18A1P39060 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
COL18A1P39060 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
COL18A1P39060 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC24.64■■□□□ 1.53
COL18A1P39060 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
COL18A1P39060 MOK-208ENST00000519058 917 ntTSL 2 BASIC24.64■■□□□ 1.53
COL18A1P39060 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC24.64■■□□□ 1.53
COL18A1P39060 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC24.64■■□□□ 1.53
COL18A1P39060 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC24.64■■□□□ 1.53
COL18A1P39060 PAM16-208ENST00000573553 722 ntTSL 2 BASIC24.64■■□□□ 1.53
COL18A1P39060 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC24.64■■□□□ 1.53
COL18A1P39060 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.53
COL18A1P39060 AC117500.6-201ENST00000624871 588 ntBASIC24.64■■□□□ 1.53
COL18A1P39060 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC24.64■■□□□ 1.53
COL18A1P39060 AC141586.3-201ENST00000562166 1838 ntBASIC24.64■■□□□ 1.53
COL18A1P39060 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC24.63■■□□□ 1.53
COL18A1P39060 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL18A1P39060 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL18A1P39060 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL18A1P39060 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
COL18A1P39060 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC24.63■■□□□ 1.53
COL18A1P39060 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC24.63■■□□□ 1.53
COL18A1P39060 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC24.63■■□□□ 1.53
COL18A1P39060 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
COL18A1P39060 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC24.63■■□□□ 1.53
COL18A1P39060 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
COL18A1P39060 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL18A1P39060 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL18A1P39060 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL18A1P39060 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL18A1P39060 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL18A1P39060 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL18A1P39060 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL18A1P39060 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL18A1P39060 KRT18P13-201ENST00000400056 1290 ntBASIC24.62■■□□□ 1.53
COL18A1P39060 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC24.62■■□□□ 1.53
COL18A1P39060 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC24.62■■□□□ 1.53
COL18A1P39060 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC24.62■■□□□ 1.53
COL18A1P39060 AC114341.1-201ENST00000618070 349 ntBASIC24.62■■□□□ 1.53
COL18A1P39060 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL18A1P39060 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC24.62■■□□□ 1.53
COL18A1P39060 NFYC-AS1-201ENST00000606277 1687 ntBASIC24.62■■□□□ 1.53
COL18A1P39060 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
COL18A1P39060 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC24.62■■□□□ 1.53
COL18A1P39060 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC24.62■■□□□ 1.53
COL18A1P39060 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL18A1P39060 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
COL18A1P39060 RPP21-221ENST00000428040 594 ntTSL 2 BASIC24.62■■□□□ 1.53
COL18A1P39060 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL18A1P39060 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC24.62■■□□□ 1.53
COL18A1P39060 FGFR3P6-201ENST00000457012 610 ntBASIC24.62■■□□□ 1.53
COL18A1P39060 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC24.62■■□□□ 1.53
COL18A1P39060 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC24.62■■□□□ 1.53
COL18A1P39060 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC24.62■■□□□ 1.53
COL18A1P39060 AC106730.1-201ENST00000566722 1090 ntBASIC24.62■■□□□ 1.53
COL18A1P39060 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC24.62■■□□□ 1.53
COL18A1P39060 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC24.62■■□□□ 1.53
COL18A1P39060 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
COL18A1P39060 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC24.61■■□□□ 1.53
COL18A1P39060 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
COL18A1P39060 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL18A1P39060 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
COL18A1P39060 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL18A1P39060 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL18A1P39060 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC24.61■■□□□ 1.53
COL18A1P39060 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC24.61■■□□□ 1.53
COL18A1P39060 POM121L3P-201ENST00000419331 1163 ntBASIC24.61■■□□□ 1.53
COL18A1P39060 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC24.61■■□□□ 1.53
COL18A1P39060 MINOS1P3-201ENST00000457048 203 ntBASIC24.61■■□□□ 1.53
COL18A1P39060 AC009065.1-201ENST00000564055 1225 ntBASIC24.61■■□□□ 1.53
COL18A1P39060 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC24.61■■□□□ 1.53
COL18A1P39060 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
COL18A1P39060 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
COL18A1P39060 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
COL18A1P39060 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
COL18A1P39060 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
COL18A1P39060 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC24.6■■□□□ 1.53
COL18A1P39060 AC145285.3-201ENST00000564603 959 ntBASIC24.6■■□□□ 1.53
COL18A1P39060 AC011840.4-201ENST00000578471 627 ntBASIC24.6■■□□□ 1.53
COL18A1P39060 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC24.6■■□□□ 1.53
COL18A1P39060 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
COL18A1P39060 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC24.6■■□□□ 1.53
COL18A1P39060 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
COL18A1P39060 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
COL18A1P39060 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
COL18A1P39060 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC24.59■■□□□ 1.53
COL18A1P39060 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC24.59■■□□□ 1.53
COL18A1P39060 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
COL18A1P39060 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
COL18A1P39060 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL18A1P39060 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL18A1P39060 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC24.59■■□□□ 1.53
COL18A1P39060 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL18A1P39060 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC24.59■■□□□ 1.53
COL18A1P39060 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL18A1P39060 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL18A1P39060 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL18A1P39060 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL18A1P39060 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC24.59■■□□□ 1.53
COL18A1P39060 RNPS1P1-201ENST00000507437 918 ntBASIC24.59■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms