Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 SPDYE13P-201ENST00000445314 798 ntBASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 RN7SL510P-201ENST00000581311 263 ntBASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDDC3Q8N4P3 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 AC246785.2-201ENST00000432512 513 ntBASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 KRT18P23-201ENST00000435622 1283 ntBASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 AL157888.1-201ENST00000631930 593 ntBASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.77■□□□□ 0.6
HDDC3Q8N4P3 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.59
HDDC3Q8N4P3 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
HDDC3Q8N4P3 KRT8P32-201ENST00000512863 1461 ntBASIC18.77■□□□□ 0.59
HDDC3Q8N4P3 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HDDC3Q8N4P3 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
HDDC3Q8N4P3 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 AL032819.2-201ENST00000624543 2162 ntBASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 MIR564-202ENST00000385049 94 ntBASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 AL645929.1-201ENST00000420084 975 ntBASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms