Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Sox3P53784 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Sox3P53784 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Sox3P53784 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Sox3P53784 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Sox3P53784 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Sox3P53784 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Sox3P53784 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Sox3P53784 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC15.17■□□□□ 0.02
Sox3P53784 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Sox3P53784 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Sox3P53784 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC15.17■□□□□ 0.02
Sox3P53784 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC15.17■□□□□ 0.02
Sox3P53784 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Gm14822-201ENSMUST00000122247 291 ntBASIC15.17■□□□□ 0.02
Sox3P53784 Gm12260-201ENSMUST00000122447 411 ntBASIC15.17■□□□□ 0.02
Sox3P53784 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC15.17■□□□□ 0.02
Sox3P53784 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC15.17■□□□□ 0.02
Sox3P53784 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.17■□□□□ 0.02
Sox3P53784 AC093043.3-201ENSMUST00000226531 2273 ntBASIC15.17■□□□□ 0.02
Sox3P53784 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Sox3P53784 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 AC133083.1-201ENSMUST00000221736 2209 ntBASIC15.16■□□□□ 0.02
Sox3P53784 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC15.16■□□□□ 0.02
Sox3P53784 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Sox3P53784 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 Gm14057-201ENSMUST00000120631 482 ntBASIC15.16■□□□□ 0.02
Sox3P53784 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC15.16■□□□□ 0.02
Sox3P53784 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC15.16■□□□□ 0.02
Sox3P53784 Gm27867-201ENSMUST00000184778 125 ntBASIC15.16■□□□□ 0.02
Sox3P53784 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC15.16■□□□□ 0.02
Sox3P53784 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
Sox3P53784 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
Sox3P53784 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC15.16■□□□□ 0.02
Sox3P53784 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC15.16■□□□□ 0.02
Sox3P53784 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sox3P53784 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Sox3P53784 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Sox3P53784 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Sox3P53784 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Sox3P53784 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
Sox3P53784 Gm15165-201ENSMUST00000118140 502 ntBASIC15.15■□□□□ 0.02
Sox3P53784 Gm15920-201ENSMUST00000118998 402 ntBASIC15.15■□□□□ 0.02
Sox3P53784 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC15.15■□□□□ 0.02
Sox3P53784 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Bloc1s5-203ENSMUST00000224902 612 ntBASIC15.15■□□□□ 0.02
Sox3P53784 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Sox3P53784 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
Sox3P53784 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Gm8784-201ENSMUST00000222096 1435 ntBASIC15.15■□□□□ 0.02
Sox3P53784 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Sox3P53784 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sox3P53784 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC15.15■□□□□ 0.02
Sox3P53784 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms