Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.61■□□□□ 0.57
CXCL12P48061 AC009065.1-201ENST00000564055 1225 ntBASIC18.61■□□□□ 0.57
CXCL12P48061 AC106730.1-201ENST00000566722 1090 ntBASIC18.61■□□□□ 0.57
CXCL12P48061 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.61■□□□□ 0.57
CXCL12P48061 MIR5100-201ENST00000579544 119 ntBASIC18.61■□□□□ 0.57
CXCL12P48061 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.61■□□□□ 0.57
CXCL12P48061 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CXCL12P48061 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.61■□□□□ 0.57
CXCL12P48061 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL12P48061 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CXCL12P48061 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.6■□□□□ 0.57
CXCL12P48061 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CXCL12P48061 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.6■□□□□ 0.57
CXCL12P48061 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CXCL12P48061 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.6■□□□□ 0.57
CXCL12P48061 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CXCL12P48061 KRT8P32-201ENST00000512863 1461 ntBASIC18.6■□□□□ 0.57
CXCL12P48061 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CXCL12P48061 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CXCL12P48061 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.6■□□□□ 0.57
CXCL12P48061 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CXCL12P48061 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CXCL12P48061 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CXCL12P48061 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.6■□□□□ 0.57
CXCL12P48061 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.6■□□□□ 0.57
CXCL12P48061 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.6■□□□□ 0.57
CXCL12P48061 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CXCL12P48061 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.6■□□□□ 0.57
CXCL12P48061 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.6■□□□□ 0.57
CXCL12P48061 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.6■□□□□ 0.57
CXCL12P48061 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CXCL12P48061 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CXCL12P48061 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CXCL12P48061 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL12P48061 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL12P48061 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL12P48061 PMS2P7-201ENST00000506558 1336 ntBASIC18.59■□□□□ 0.57
CXCL12P48061 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL12P48061 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL12P48061 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL12P48061 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.59■□□□□ 0.57
CXCL12P48061 POLD2P1-201ENST00000511220 997 ntBASIC18.59■□□□□ 0.57
CXCL12P48061 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.59■□□□□ 0.57
CXCL12P48061 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CXCL12P48061 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.59■□□□□ 0.57
CXCL12P48061 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.59■□□□□ 0.57
CXCL12P48061 TERC-201ENST00000602385 541 ntBASIC18.59■□□□□ 0.57
CXCL12P48061 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL12P48061 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL12P48061 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL12P48061 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL12P48061 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL12P48061 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL12P48061 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CXCL12P48061 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.58■□□□□ 0.57
CXCL12P48061 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CXCL12P48061 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.58■□□□□ 0.57
CXCL12P48061 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CXCL12P48061 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CXCL12P48061 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CXCL12P48061 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CXCL12P48061 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.58■□□□□ 0.57
CXCL12P48061 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CXCL12P48061 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.58■□□□□ 0.57
CXCL12P48061 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CXCL12P48061 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.58■□□□□ 0.57
CXCL12P48061 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.58■□□□□ 0.56
CXCL12P48061 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.58■□□□□ 0.56
CXCL12P48061 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CXCL12P48061 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.58■□□□□ 0.56
CXCL12P48061 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CXCL12P48061 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CXCL12P48061 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.58■□□□□ 0.56
CXCL12P48061 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.58■□□□□ 0.56
CXCL12P48061 AC148477.8-201ENST00000624298 468 ntBASIC18.58■□□□□ 0.56
CXCL12P48061 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
CXCL12P48061 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CXCL12P48061 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.58■□□□□ 0.56
CXCL12P48061 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CXCL12P48061 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CXCL12P48061 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CXCL12P48061 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CXCL12P48061 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.57■□□□□ 0.56
CXCL12P48061 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CXCL12P48061 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.57■□□□□ 0.56
CXCL12P48061 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CXCL12P48061 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CXCL12P48061 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CXCL12P48061 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.57■□□□□ 0.56
CXCL12P48061 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.57■□□□□ 0.56
CXCL12P48061 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CXCL12P48061 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.57■□□□□ 0.56
CXCL12P48061 AC092183.1-201ENST00000469884 875 ntBASIC18.57■□□□□ 0.56
CXCL12P48061 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.57■□□□□ 0.56
CXCL12P48061 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.57■□□□□ 0.56
CXCL12P48061 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.57■□□□□ 0.56
CXCL12P48061 BNIP3P18-201ENST00000593976 575 ntBASIC18.57■□□□□ 0.56
CXCL12P48061 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC18.57■□□□□ 0.56
CXCL12P48061 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CXCL12P48061 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms