Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Upf3bQ3ULL6 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Upf3bQ3ULL6 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Gm25406-201ENSMUST00000157599 105 ntBASIC17■□□□□ 0.31
Upf3bQ3ULL6 Gm8349-201ENSMUST00000182720 1003 ntBASIC17■□□□□ 0.31
Upf3bQ3ULL6 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Upf3bQ3ULL6 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Upf3bQ3ULL6 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Zkscan3-208ENSMUST00000224820 5398 ntBASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Gm7935-201ENSMUST00000100555 1278 ntBASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Upf3bQ3ULL6 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Upf3bQ3ULL6 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Gm25745-201ENSMUST00000174945 133 ntBASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 69.3 ms